BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0139.p
         (255 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313463|ref|YP_003777555.1| PP-loop superfamily ATPase [Her...   471   e-134

>gi|300313463|ref|YP_003777555.1| PP-loop superfamily ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  471 bits (1213), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/241 (92%), Positives = 232/241 (96%)

Query: 13  TPAIAPTLSTQSALVLFSGGQDSTTCLAWALSRYQRVETIGFDYGQRHAIELEVRPALLE 72
           +P++APTL+TQSALVLFSGGQDSTTCLAWALSRYQRVETIGFDYGQRHAIEL VRPALLE
Sbjct: 21  SPSLAPTLNTQSALVLFSGGQDSTTCLAWALSRYQRVETIGFDYGQRHAIELAVRPALLE 80

Query: 73  KMKAFSPEWQARLGEDHMIDLSLIGKISDTALTRDVAIAMQDNGLPNTFVPGRNLLFMTV 132
           +M+AFSP+WQ RLGEDHMIDLSLIGKISDTALTRDV IAMQDNGLPNTFVPGRNLLFMTV
Sbjct: 81  RMRAFSPDWQTRLGEDHMIDLSLIGKISDTALTRDVEIAMQDNGLPNTFVPGRNLLFMTV 140

Query: 133 AATLAYRRGLNVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWIDKA 192
           AATLAYRRGLNVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWIDKA
Sbjct: 141 AATLAYRRGLNVLVGGMCETDFSGYPDCRDDTMKALQVALNLGMATQLKVETPLMWIDKA 200

Query: 193 ETWSLAESLGGTALVDLIRADTHTCYLGERGQLHDWGHGCGKCPACELRARGYQQYAARK 252
            TW+LAE LGG  LVDLIR DTHTCYLGERG LHDWGHGCGKCPACELRARGYQQYAARK
Sbjct: 201 GTWALAELLGGAPLVDLIRTDTHTCYLGERGALHDWGHGCGKCPACELRARGYQQYAARK 260

Query: 253 S 253
           S
Sbjct: 261 S 261


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 775,376
Number of extensions: 31703
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,226,865
Effective search space: 211020780
Effective search space used: 211020780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)