BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0138.p
         (395 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein ...   693   0.0  
gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein ...   110   3e-25

>gi|300313464|ref|YP_003777556.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/395 (87%), Positives = 365/395 (92%)

Query: 1   MPQARTTLLLARSAAALLVLLASAEIGRRIADLPSLPALVDLQFDLTPRSQSFKVFEDNP 60
           MP ARTT LL RSAAALLVLLA AEIGRRIADLPSLPALVDLQFD+TPRSQS+KVFE N 
Sbjct: 1   MPHARTTTLLTRSAAALLVLLAGAEIGRRIADLPSLPALVDLQFDITPRSQSYKVFEANR 60

Query: 61  IARSSHPQPLPTALRPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYERYIDGY 120
           IARS+HP+P P ALR L I VPWKDG +LP+IDF+K T+AHAFVVIQDG +VYERYIDGY
Sbjct: 61  IARSTHPRPWPMALRALEISVPWKDGSQLPVIDFLKTTSAHAFVVIQDGKIVYERYIDGY 120

Query: 121 DANSRFTSFSVAKSFVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIGQLLDM 180
           DANSRFTSFSVAKSFVSALTGVAL+QGKIRSL++PIG YL  DEI+PAYA ITIGQLLDM
Sbjct: 121 DANSRFTSFSVAKSFVSALTGVALQQGKIRSLDEPIGHYLNSDEIAPAYAGITIGQLLDM 180

Query: 181 RSGIDVDENYGGSLASPVVRMFVSTDLQRFIARRSGLRFAPGSRFEYRSVDTLILSRVLA 240
           RSGIDVDENYGGSLASPVVRMFVSTDL RFIARRSGLRFAPGSRFEYRSVDTL+LSRVLA
Sbjct: 181 RSGIDVDENYGGSLASPVVRMFVSTDLHRFIARRSGLRFAPGSRFEYRSVDTLVLSRVLA 240

Query: 241 RATGMRLSDFAQQALWEPLGMEQDASWSVDSRQHGVEKAFCCLNTTARDFARLGLLYLHG 300
            ATGMRLSDFAQQ LWEPLGMEQDASWSVDS QHGVEKAFCCLNTTARDFARLGLLYL G
Sbjct: 241 HATGMRLSDFAQQVLWEPLGMEQDASWSVDSGQHGVEKAFCCLNTTARDFARLGLLYLDG 300

Query: 301 GRIGEQQIVSPAWAAEPRQPVNNGNALDYRDGWWIPPGNANDRDFSAIGVFGQYIYVNPA 360
           GR+G+QQ+VSP+WA EPRQPVN+G  LDYRDGWWIPPGNA+DRDFSAIGVFGQYIYVNPA
Sbjct: 301 GRVGDQQVVSPSWAHEPRQPVNHGEVLDYRDGWWIPPGNADDRDFSAIGVFGQYIYVNPA 360

Query: 361 TRTVIVKLSDYGTEQDEVLTMLAMRSISHVVSSKE 395
           TRTVIVKLSDYG EQDEVLTMLAMRSISH V+ K 
Sbjct: 361 TRTVIVKLSDYGVEQDEVLTMLAMRSISHYVAGKN 395


>gi|300312335|ref|YP_003776427.1| beta-lactamase class C protein
           [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 150/323 (46%), Gaps = 24/323 (7%)

Query: 62  ARSSHPQPLPTALRPLNIDVPWKDGKRLPLIDFIKGTAAHAFVVIQDGSVVYERYIDGYD 121
           A ++ P PLP A     I   +++G    L D++    A A VV++DG +V +R+  G  
Sbjct: 66  APAAQPVPLPAADPETTIHYRYRNGS-WTLDDYMAHQRATAVVVVKDGRIVAQRFNYGRT 124

Query: 122 ANSRFTSFSVAKSFVSALTGVALKQGKIRSLNDPIGRYLKPDEISPAYANITIGQLLDMR 181
              R  S S+AK+ V+     AL+ GKI SL+D    Y+ P      Y    +  LL M 
Sbjct: 125 PQMRMLSNSMAKTVVALGILKALELGKIASLDDHAEDYV-PALKGTLYGRTQLVNLLRMA 183

Query: 182 SGIDVDENYGGSLASPVVRMFVSTDLQRFIARRSGLRFAP-GSRFEYRSVDTLILSRVLA 240
           SG    E+Y  +    +    +  +      +    R AP G RF Y    T +L  VL 
Sbjct: 184 SGARFTEDYTSNDDRAIFVRKLRREGTLAAVQSISERAAPEGERFNYAGAQTSVLGLVLQ 243

Query: 241 RATGMRLSDFAQQALWEPLGMEQDASWSVD--SRQHGVEKAFCCLNTTARDFARLGLLYL 298
            ATG  +  +  + +W+P+G   +A+W ++   +Q   +  F   N T  D+ARLG+L  
Sbjct: 244 AATGQDMCQWIGEQIWQPMGAAAEATWLLNPVDQQALAQGGF---NATVYDYARLGMLLA 300

Query: 299 HGGRIGEQQIVSP----AWAAEPRQP--VNNGNALD--------YRDGWWIPPGNANDRD 344
           + G    QQ+++     A     RQP     G  LD        Y    WI PG  + R 
Sbjct: 301 NDGVANGQQVIAREHVLAMTDPARQPPAFRPGVMLDSHGRTYFGYGYQVWIMPG--SHRR 358

Query: 345 FSAIGVFGQYIYVNPATRTVIVK 367
           F+ +G++GQ ++V+P  + V+V 
Sbjct: 359 FALLGIYGQAVFVDPELKLVMVH 381


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,251
Number of extensions: 55170
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 395
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,207,925
Effective search space: 372040900
Effective search space used: 372040900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)