BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0136.p
         (299 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180...   162   2e-41

>gi|300313466|ref|YP_003777558.1| hypothetical protein Hsero_4180
           [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  162 bits (411), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/298 (45%), Positives = 176/298 (59%), Gaps = 15/298 (5%)

Query: 13  PRLCAGLDIATDRVRLALLRRSGRRAQLLKLKQRLTGGVICRDGQITDFEALTLICRSLL 72
           PRLC GLD+A  R+RLAL RR GR+ ++L+L Q      + +DGQITD +A+   CR LL
Sbjct: 83  PRLCIGLDLAPQRLRLALARRRGRQREVLRLAQAALPDGLLQDGQITDLDAVVQACRPLL 142

Query: 73  DEGGCQGAALALAVPVQGLTGRRLVLPADSHPVQRWRQVQSELAAHGIAADDHAMDYREL 132
           D      AAL L +P   L+ +RLVLPA S   +R  QV++E++A+G+A  DH MDYR  
Sbjct: 143 DPACPAQAALVLGMPRTCLSVQRLVLPAGSSDWERLAQVRAEMSAYGLAPADHVMDYRVA 202

Query: 133 GPPPGSPSDQQVLAVAASRLIIEDRLSLAAAVGRPLVTLAPEDLCLAAWLRDDRLPGETA 192
             P  +  D  + A AAS L +EDRL+LAAA+ RPL  L PED CL  +LR        A
Sbjct: 203 --PARAGQDVSLWAWAASSLAVEDRLALAAALHRPLAALPPEDECLGDFLRPAASAAHDA 260

Query: 193 VLRLDRSARWLLHGEGPSHALPEVSARGGHLALLAHAAPLLKPLPRRLLLSGD------H 246
           +L LD    WL++G+ P+  L    A  G  ALLA  APLL+P P+RLLL         H
Sbjct: 261 LLHLDPDDSWLIYGDTPAQGLRWRPAVAGPTALLAELAPLLRPKPQRLLLDCHPAALPTH 320

Query: 247 PALGTIARAFVKYAGLEARVAAPPSSLVLTPQIAALMP-----SDYQLALALAWEGLA 299
            AL  +  AF +YAGL A  A  P+ L+L P  +A +P       + LA+ALAW GLA
Sbjct: 321 DALPMLRAAFARYAGLRALPAPLPADLILAP--SARLPGANPVGSFHLAIALAWRGLA 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,597
Number of extensions: 37005
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,217,395
Effective search space: 260522530
Effective search space used: 260522530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)