BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0133.p
         (215 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313468|ref|YP_003777560.1| hypothetical protein Hsero_4182...    85   6e-18

>gi|300313468|ref|YP_003777560.1| hypothetical protein Hsero_4182
           [Herbaspirillum seropedicae SmR1]
          Length = 202

 Score = 84.7 bits (208), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 10/160 (6%)

Query: 27  PDEVQATRMWITQVRPSSTLP--LPAAALSDAATEDSLPG-EDSELPDPFQL---GALAP 80
           PDE+ +TR W+   R  S+     P A+L  AA+E   P   D E+ DPF+L    A  P
Sbjct: 26  PDELASTRQWLAGARQLSSQAGAAPPASLVQAASETPAPPLPDVEIVDPFRLRQDAAAPP 85

Query: 81  ASPTRPAASRVRAQDEEDEENSPVPAAAPIAPLPTPVLRLLGTLRRDQEWIAIAELEGST 140
           A+       RVR    E+E++ PVP+  P APLP    RLLGTLR+    +A+ ++ G+T
Sbjct: 86  ATAVERPPQRVRRDASEEEDDEPVPSPRPTAPLP----RLLGTLRQQDLMLALIDIGGAT 141

Query: 141 RQLQTGDTLPGGLGRVLAVREDALDIGQDDAARQTIAMTT 180
            +LQ G  LP G G++L + E  ++I      RQT+++ +
Sbjct: 142 HRLQAGQQLPDGQGQLLTISETHIEIADPQGTRQTLSLES 181


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,618
Number of extensions: 15600
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 134
Effective length of database: 1,236,335
Effective search space: 165668890
Effective search space used: 165668890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)