BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0131.p
         (599 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate s...  1099   0.0  

>gi|300313470|ref|YP_003777562.1| bifunctional 3-dehydroquinate
           synthase/shikimate kinase [Herbaspirillum seropedicae
           SmR1]
          Length = 596

 Score = 1099 bits (2843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/599 (89%), Positives = 561/599 (93%), Gaps = 3/599 (0%)

Query: 1   MTGSIFLVGLMGAGKTTIGRALAKKLNKRFVDSDHEIEARTGATIPVIFEIEGEENFRRR 60
           MTGSIFLVGLMGAGKTTIGRALAKKLNKRF+DSDHEIEARTGATIPVIFEIEGEENFRRR
Sbjct: 1   MTGSIFLVGLMGAGKTTIGRALAKKLNKRFIDSDHEIEARTGATIPVIFEIEGEENFRRR 60

Query: 61  EAEIIRELAAQPDIVLATGGGAVLRAENRENLKKGGTVVYLRASINQILQRTGRDKNRPL 120
           EAE+IREL A PDIVLATGGGA+LRAENR+NLKKGGTVVYLRASINQILQRTGRDKNRPL
Sbjct: 61  EAEVIRELTALPDIVLATGGGAILRAENRDNLKKGGTVVYLRASINQILQRTGRDKNRPL 120

Query: 121 LQTADPRRKLEELSRQRDPLYREVADFVVETNRPNVQFLVQTIISHLELSPKDGSWLAEP 180
           LQTADPRRKLEELSRQRDPLYR+VADFV+ETNRPNVQFLVQTIISHLELSP + SW + P
Sbjct: 121 LQTADPRRKLEELSRQRDPLYRDVADFVIETNRPNVQFLVQTIISHLELSPPESSWQSAP 180

Query: 181 EPDETVVFESHSAVLTQGADGSTTLSRSHSTQIFHGAASTEPNLRSMNQNTAPAATTIAS 240
             DET+V E  SA++T  ADG+  +S SH++Q FHGAAS EP L  MNQNTA A    A 
Sbjct: 181 AADETIVIERSSALVTSAADGAVVVSTSHTSQTFHGAASAEPTLARMNQNTASAP---AP 237

Query: 241 LTLNVDLGERSYPIHIGRGLLDDATLLPQYVKGKRVAIVTNDKVGPLYLDKVAQALRAAG 300
           +TLNVDLGERSYPIHIGRGLLDDA LLPQYVKGKRVAIVTNDKVGPLYLDKVAQ LRAAG
Sbjct: 238 ITLNVDLGERSYPIHIGRGLLDDAGLLPQYVKGKRVAIVTNDKVGPLYLDKVAQPLRAAG 297

Query: 301 KQVTEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRG 360
           K VTEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRG
Sbjct: 298 KLVTEIVLPDGEEEKNWASLMKIFDRLLADKCDRKTTLIALGGGVIGDLTGFAAASYMRG 357

Query: 361 VPFVQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELAAG 420
           VPFVQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPREL+AG
Sbjct: 358 VPFVQVPTTLLSQVDSSVGGKTGINHPLGKNMIGAFYQPQAVIADTATLHTLPPRELSAG 417

Query: 421 IAEVIKHGAIIDAPFFDWIETNMARLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRA 480
           IAEVIKHGAIIDAPFFDWIETN+A+LVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRA
Sbjct: 418 IAEVIKHGAIIDAPFFDWIETNIAQLVSKDDAALAYAIQRSCEIKAEVVRQDEREGGLRA 477

Query: 481 ILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSQRLGYIDGATRERIRAVTAAAG 540
           ILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLS RLGYID   R+R+RA+TAAAG
Sbjct: 478 ILNFGHTFGHAIENGLGYGQWLHGEAVGCGMVMAADLSHRLGYIDAGARDRVRALTAAAG 537

Query: 541 LPTVAPNLGTDRWLDLMEVDKKNEGGAIKFILIKPLGSPLITNAPQELLLQTLAACTGE 599
           LPTVAP+LG  RWL+LMEVDKKNEGG IKFILI+PLGSPLITN PQ+LLLQTLAACTGE
Sbjct: 538 LPTVAPDLGVARWLELMEVDKKNEGGQIKFILIRPLGSPLITNVPQDLLLQTLAACTGE 596


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,898,339
Number of extensions: 81473
Number of successful extensions: 352
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 508
Effective length of database: 1,188,985
Effective search space: 604004380
Effective search space used: 604004380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)