BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0129.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186...   353   6e-99

>gi|300313472|ref|YP_003777564.1| hypothetical protein Hsero_4186
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score =  353 bits (907), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 188/251 (74%), Positives = 212/251 (84%), Gaps = 4/251 (1%)

Query: 1   MAIGNTSVVDNKSLLPVTPSSTSSTSAAASDNDKLPATAGDSSSGDKIAQAKQANLLTVS 60
           MAIGN + VD KSLLP T    S  + + S++D+  A A   +  DKIA+AK+ANLLT +
Sbjct: 1   MAIGNNNGVDTKSLLPST-KLPSVNAGSTSESDRQSANAASPAVSDKIAEAKKANLLTEA 59

Query: 61  GAKAQFNLSIVQSSLEVSLQTQNDPLSLVYKTAIENINDILRPQLGDNAIQTASTQDNSP 120
           GAKAQFNLSIVQ+SLEVSLQTQNDPLSLVYKTAIENIND+LRPQLGDNAIQ  ++QDN+P
Sbjct: 60  GAKAQFNLSIVQASLEVSLQTQNDPLSLVYKTAIENINDVLRPQLGDNAIQNTASQDNTP 119

Query: 121 EATAGRIVSFITNMFELYKKNNPDKEDSSNIDDYMNLIFKGVDQGFKEARGILESLNVLQ 180
           EATAGRIVSFITNMF+L+KKNNPDK+DSSNIDDYM LIFKGVDQGFKEARGILESL+VLQ
Sbjct: 120 EATAGRIVSFITNMFDLFKKNNPDKDDSSNIDDYMKLIFKGVDQGFKEARGILESLSVLQ 179

Query: 181 GDIASNIDKTYDLVQKALGDFINKVKGGKQEGEDGAGSEGNADGQGGTLTASETTVSISV 240
           GDIA NIDKTYDLVQK+L DFINKVKG K + E+G G        GGT+ ASETTVSIS+
Sbjct: 180 GDIADNIDKTYDLVQKSLNDFINKVKGAKPDTEEGQGQNDGQ---GGTVVASETTVSISI 236

Query: 241 SVSQTRISTSA 251
           SVSQTRISTSA
Sbjct: 237 SVSQTRISTSA 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.305    0.123    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 627,574
Number of extensions: 22620
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 129 (54.3 bits)