BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0121.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol hy...   735   0.0  
gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol hy...    92   7e-20

>gi|300313476|ref|YP_003777568.1| 2-polyprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/410 (92%), Positives = 396/410 (96%)

Query: 1   MTTQAHTHTSSPAAAGTDICIVGDGAVGKTAALGLAQAGFKVTLLAPPPASATPDPASWD 60
           MTT AH ++SS A AGTDICIVGDGAVGKTAALGLAQAGFKVTLLAPPP +A PD ASWD
Sbjct: 1   MTTHAHPNSSSSAGAGTDICIVGDGAVGKTAALGLAQAGFKVTLLAPPPKAAPPDTASWD 60

Query: 61  VRVYALNHTAHRLLSSVRVWDAMDAARIAPVDNMTVHGDGLPEKARPGLLSFDAYAARTD 120
           VRVYALNHTA RLLSSVRVWDAM+  RIA VDNMTVHGDG+P+KARPGLLSFDAYAARTD
Sbjct: 61  VRVYALNHTAQRLLSSVRVWDAMEGERIAAVDNMTVHGDGVPDKARPGLLSFDAYAARTD 120

Query: 121 ALAWIVEDRNLDQALDAALRFAPNVRVLHGRATALAVAGETATLTLESGQSLSAALVVGA 180
           ALAWIVEDRNLDQALDAALRFAPN+RV+ GRATALAV GETATLTLESGQSLSA+LV+GA
Sbjct: 121 ALAWIVEDRNLDQALDAALRFAPNIRVVQGRATALAVLGETATLTLESGQSLSASLVIGA 180

Query: 181 DGANSWVRGQCDIGLDYRAYGQNAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRV 240
           DGANSWVRGQCDIGLDYRAYGQNAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRV
Sbjct: 181 DGANSWVRGQCDIGLDYRAYGQNAIVTNFSCELPHRGVAYQWFSPTEGVIALLPLPGNRV 240

Query: 241 SLVWSAPQALADQLLQLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA 300
           SLVWSAPQALADQLL+LPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA
Sbjct: 241 SLVWSAPQALADQLLKLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRLIKPHAMIA 300

Query: 301 PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDERVLRRYARARKEE 360
           PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDER+LRRYARARKEE
Sbjct: 301 PRVALIGDAAHVVHPMAGHGMNLGFGDVAALIDILLKREPQYDCGDERLLRRYARARKEE 360

Query: 361 VLLMQIATDGLHRLFSTEAEPVRLVRNLGMSLVNHLPILKRRLIAHALGQ 410
           VLLMQIATDGLHR+FSTEAEPVRLVRNLGMSL+N LP+LKRRLIAHALGQ
Sbjct: 361 VLLMQIATDGLHRIFSTEAEPVRLVRNLGMSLLNRLPVLKRRLIAHALGQ 410


>gi|300310036|ref|YP_003774128.1| 2-octaprenyl-6-methoxyphenol
           hydroxylase [Herbaspirillum seropedicae SmR1]
          Length = 382

 Score = 92.0 bits (227), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 183/399 (45%), Gaps = 35/399 (8%)

Query: 18  DICIVGDGAVGKTAALGLAQAGFKVTLLAPPPASATPDPASWDVRVYALNHTAHRLLSSV 77
           D+ I G G VG++ A  LA+       +A      +P+ A+ D R  AL++ + ++L  +
Sbjct: 7   DLIICGGGPVGQSVAGLLARRQLPAARIALVDMK-SPEQAAADPRTIALSYGSRQILDEL 65

Query: 78  RVWDAMDAARIAPVDNMTVHGDGLPEKARPGLLSFDAYAARTDALAWIVEDRNLDQALDA 137
             WD  D  R A      +H   +  +   G    D    +  AL ++     +++AL +
Sbjct: 66  GAWD--DIGRSATAIEQ-IH---VSRRGHFGRTLLDRKDYQLPALGYVARYGEVNRALAS 119

Query: 138 ALRFAPNVRVLHGRATALAVAGET--ATLTLESGQSLSAALVVGADGANSWVRGQCDIGL 195
           A+  AP    L   A A  +  E     +TL+ G+ L A LV+ A+G    V G+     
Sbjct: 120 AI--APLGLSLMRPAEAQQIEEEDQHVAVTLKDGRILRAHLVIQAEGG---VFGEQQHKT 174

Query: 196 DYRAYGQNAIVTNFSCE--LPHRGVAYQWFSPTEGVIALLPLPGNRVSLVWSAPQALADQ 253
             R Y Q  I+ +   +  + HR  A++ F+  EG +ALLP   +  +LVW    A  +Q
Sbjct: 175 LQRDYQQLGIIAHVQADGVIAHR--AFERFT-DEGPLALLP-QDDGYALVWCVRPATGEQ 230

Query: 254 LLQLPLSALAERLAQWAAPVLGALTPLQPEVAKAFPLRL-IKPHAMIAPRVALIGDAAHV 312
           L+ L  +     L +     +G  T + P    AFPL L  +P    + RV  IG+AA  
Sbjct: 231 LMALEDAGFLAALQRTFGERVGRFTRISPR--HAFPLGLNARPGQ--SRRVVAIGNAAQT 286

Query: 313 VHPMAGHGMNLGFGDVAALIDILLKR-EPQYDCGDERVLRRYARARKEEVLLMQIATDGL 371
           +HP+AG G+NLG  D   L D+L +   PQ        L+ + R R ++  L    TD +
Sbjct: 287 LHPVAGQGLNLGLRDARVLADVLAREISPQ-------ALQAFERQRGQDRSLTIRLTDLM 339

Query: 372 HRLF--STEAEPVRLVRNLGMSLVNHLPILKRRLIAHAL 408
            R+F  S +  P++    L +  ++ LP  +  L  H +
Sbjct: 340 ARIFAGSPQGSPLQAALGLSLGAIDLLPGARGLLAEHMM 378


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,320,395
Number of extensions: 54892
Number of successful extensions: 225
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)