BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0118.p
         (1138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312484|ref|YP_003776576.1| serine endopeptidase [Herbaspir...    68   4e-12

>gi|300312484|ref|YP_003776576.1| serine endopeptidase [Herbaspirillum
            seropedicae SmR1]
          Length = 1371

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 155/371 (41%), Gaps = 22/371 (5%)

Query: 780  LDALGNNSSNAQVQNLLASLDALPTAAAYRSAVRQLQPETNRASQQAAQVSMGSVFSAVA 839
            LD      S+A +  ++ +L  LP AA+   A  Q  P     S  A +  + S+   +A
Sbjct: 1011 LDRQIQQPSSADMAQVVTALGRLPDAASVLRAASQTLPR--NVSDNAIRGVLASLDRVIA 1068

Query: 840  GRVDSARGDAPVASQG-GSGVATGEAAARGRVWLQGLGAWGRQQARAGADGYDVSAYGMA 898
             R+D   G+   ++ G GSG+  GEA    +VWL    +   Q  R G  G+  S +GMA
Sbjct: 1069 TRLD--LGNLAGSATGTGSGLGYGEAGGDRQVWLMPFESRTNQGDRDGDSGFSASTWGMA 1126

Query: 899  AGMETDLSAREVAGLTLGYTRAGTRGSDNA----SGNDVNVDAVHVGGYVGLDMDGWTLD 954
             G E    +  V    L Y  A T  S N     +G+   +++  V  Y  + +    L 
Sbjct: 1127 TGAEMAWDSGRVG---LSYAYASTSASGNTAITGAGSRSRIESNLVALYGSVPLGKLALS 1183

Query: 955  GALMVGGNHYSSQRAISF--LGQTVSGSYNGW--QVGARVEAGLPFALSQRWSGRWLAGL 1010
                 G N     R + F  L +  S  Y+ W   +GA V   LP  LS+  S      L
Sbjct: 1184 WQADAGWNSNRLAREMQFGGLHRIASSRYHTWSAHLGANVSHTLP--LSEALSVVPALQL 1241

Query: 1011 RLSHLSNEGYTESGNAALAQNVESSRANSVQPTLGVEFNRLSDNGDRLQLRARYLHELAG 1070
              + + +  Y ESG   L+ +V+  R  ++   +G   N       ++       +++  
Sbjct: 1242 DYTRMQSPSYAESGAGDLSLSVQGKRTQALLLGVGTRLNYALSTTSQISTHVGASYDVIN 1301

Query: 1071 NP-DVTASFVAGGP--SFTTASTAPNRDAVQLGVSYRFNGAQGSYGTLGYDAEVRDRSLM 1127
            +  D+ A++ AG P  +FT   +A +    + GVSYRF     +  +L  DAE R   + 
Sbjct: 1302 DRGDLVATY-AGTPGQAFTAPGSARSAWLFKAGVSYRFQLTTEADISLRLDAEGRSGFIN 1360

Query: 1128 HQLTARVGWLF 1138
                 +  W F
Sbjct: 1361 QSAALKASWRF 1371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.311    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 3,291,410
Number of extensions: 137817
Number of successful extensions: 516
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 515
Number of HSP's successfully gapped: 2
Length of query: 1138
Length of database: 1,619,870
Length adjustment: 96
Effective length of query: 1042
Effective length of database: 1,165,310
Effective search space: 1214253020
Effective search space used: 1214253020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 136 (57.0 bits)