BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0117.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309911|ref|YP_003774003.1| hypothetical protein Hsero_0576...   278   4e-76

>gi|300309911|ref|YP_003774003.1| hypothetical protein Hsero_0576
           [Herbaspirillum seropedicae SmR1]
          Length = 290

 Score =  278 bits (710), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 138/248 (55%), Positives = 177/248 (71%), Gaps = 3/248 (1%)

Query: 29  SDPDLVQRADALVAPAGLQREEVRGGPFVLTAYVHARPKAPLLRVYLEGDGRAWITRNQV 88
           SDP  +  ADA+   AGL+RE  R GPF+LTAYV        L +Y+EGDG AW +R + 
Sbjct: 37  SDP--LANADAMTQAAGLRRELTRSGPFLLTAYVRISRLDQPLNLYIEGDGLAWRSRYEP 94

Query: 89  SPDPTPHTAMGLRLAASDG-GDVVYLARPCQFTPMARNPICQPEYWAGLRYSPLVVSAMD 147
           S DPTP  A+GL LAA+D   ++VYLARPCQFTPMA NP C   YW G R++P VV+AM+
Sbjct: 95  SADPTPRKALGLSLAAADNSANMVYLARPCQFTPMASNPACNVGYWTGKRFAPEVVAAMN 154

Query: 148 EALSRYVARLQPARLELVGFSGGGAIAVLLAARRKDVSAIRTVAGNLDHVAVNQWHKVSQ 207
           EA+  Y+ R+   R+ LVG+SGGGAIAVL+AARR DV+ +RTVAGNLDHVA+N+WHKV+ 
Sbjct: 155 EAVGHYLERVPGQRVNLVGYSGGGAIAVLIAARRNDVATVRTVAGNLDHVALNRWHKVTP 214

Query: 208 MPGSLNPIDVAAQVERIPQLHVSGAEDTVIPTAITHSFVDQVGRCAGLMTVQGMAHQSDW 267
           M  SLN IDVA++V  I QLH SG++D ++P     +FV QVG CA L  + G++H+ DW
Sbjct: 215 MSDSLNAIDVASRVAGIAQLHFSGSDDVIVPERFARAFVQQVGACAHLRVLPGLSHEGDW 274

Query: 268 DRLWPKLL 275
             +WP LL
Sbjct: 275 AAIWPSLL 282


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 978,776
Number of extensions: 44814
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)