BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0110.p
         (428 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313518|ref|YP_003777610.1| type III effector HopAN1 protei...   838   0.0  

>gi|300313518|ref|YP_003777610.1| type III effector HopAN1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 428

 Score =  838 bits (2165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/428 (96%), Positives = 423/428 (98%)

Query: 1   MSTSRPLLGCIADDFTGATDLANMLVRGGMRTVQTIGVPSEMPAVAADALVIALKSRTIP 60
           MSTSRPLLGCIADDFTGATDLANMLVRGGMRTVQTIGVP+EMPAVAADALVIALKSRT+P
Sbjct: 1   MSTSRPLLGCIADDFTGATDLANMLVRGGMRTVQTIGVPAEMPAVAADALVIALKSRTVP 60

Query: 61  AAEAIEQSLAALRWLQQQGCTQFFFKYCSTFDSIDEGNIGPVTDALMKELGEDFTIACPA 120
           AAEAI QSLAALRWLQQQGCTQFFFKYCSTFDS D GNIGPVTDALMKELG DFTIACPA
Sbjct: 61  AAEAIAQSLAALRWLQQQGCTQFFFKYCSTFDSTDAGNIGPVTDALMKELGVDFTIACPA 120

Query: 121 FPENGRTIYRGYLFVADALLNESGMENHPLTPMTDANLVRVLQRQTESKVGLVRYDTVAR 180
           FPENGRTIYRGYLFVADALLNESGMENHPLTPMTDANLVRVLQRQTESKVGLVRYDTVAR
Sbjct: 121 FPENGRTIYRGYLFVADALLNESGMENHPLTPMTDANLVRVLQRQTESKVGLVRYDTVAR 180

Query: 181 GAAATQERFTALRADGVKMAIADAVSDKDLFTLGEACAELKLITGGSGVALGLPENFRRA 240
           GAAATQERFTALR++GVKMAIADAVSDKDLFTLGEACAELKLITGGSGVALGLPENFRRA
Sbjct: 181 GAAATQERFTALRSEGVKMAIADAVSDKDLFTLGEACAELKLITGGSGVALGLPENFRRA 240

Query: 241 GLLTAAGEAAQLPKVDGLSVVLAGSASKATNAQVAEWKAKRPAFRIDPLALARGEDVVAQ 300
           GLLTA GEAAQLPKVDGLSVVLAGSASKATNAQVAEWKAKRPAFRIDPLALARGEDVVAQ
Sbjct: 241 GLLTAVGEAAQLPKVDGLSVVLAGSASKATNAQVAEWKAKRPAFRIDPLALARGEDVVAQ 300

Query: 301 ALAFADERIQNEPVLIYATATPDEVKAVQKELGVAKAGHLVEQALASIAAGLKQRGVRQF 360
           ALAFADERI+NEPVLIYATATPDEVKAVQKELGVAKAGHLVEQALASIAAGL+QRGVRQF
Sbjct: 301 ALAFADERIKNEPVLIYATATPDEVKAVQKELGVAKAGHLVEQALASIAAGLRQRGVRQF 360

Query: 361 VVAGGETSGAVVQALDVRALRIGPQIDPGVPATATLDEQPVALALKSGNFGSVDFFEKAL 420
           VVAGGETSGAVVQAL+VRALRIGPQIDPGVPATATLD+QPVALALKSGNFGSVDFFEKAL
Sbjct: 361 VVAGGETSGAVVQALEVRALRIGPQIDPGVPATATLDDQPVALALKSGNFGSVDFFEKAL 420

Query: 421 RYLDGKTA 428
           RYLDGKTA
Sbjct: 421 RYLDGKTA 428


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,342,378
Number of extensions: 57961
Number of successful extensions: 260
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,203,190
Effective search space: 409084600
Effective search space used: 409084600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)