BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0104.p
         (406 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillu...   621   e-179

>gi|300313524|ref|YP_003777616.1| cyanate permease [Herbaspirillum
           seropedicae SmR1]
          Length = 401

 Score =  621 bits (1602), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 350/395 (88%), Positives = 370/395 (93%)

Query: 10  ATHPPHVRPLQRNVWLIAGILLIAANLRAPVTAVGPVMGLLQQTFALSAGAAGLMLTLPL 69
           ATHP  V P+ R++WLIAGILLIAANLRAPVTAVGPVMG+LQQTFALSAGAAGLMLTLPL
Sbjct: 7   ATHPHGVSPVPRSLWLIAGILLIAANLRAPVTAVGPVMGVLQQTFALSAGAAGLMLTLPL 66

Query: 70  LCFALVSPLAARVARSLGLERTLLLALLLIAGGIVLRSSGSVAALLAGTCVIGCGIAGGN 129
           LCFALVSPLAAR ARSLGLERTLLLALLLI  GI+LRSSG+VA LLAGTC+IGCGIAGGN
Sbjct: 67  LCFALVSPLAARTARSLGLERTLLLALLLIGAGILLRSSGTVAGLLAGTCIIGCGIAGGN 126

Query: 130 VLLPSLLKRDFPDDLTRMTAIYALTMGGASAFGSVCAVPLAAGLGWAWALASFIALPVVT 189
           VLLPSLLKRDF DDLTRMTAIYALTM   SA GSVCAVPLA  LGWAWALA+FIALP+V 
Sbjct: 127 VLLPSLLKRDFADDLTRMTAIYALTMNSVSALGSVCAVPLATRLGWAWALAAFIALPLVA 186

Query: 190 VLVWLPQLRRDTRPATAPARAASMWRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANGH 249
           +L WLPQL+RDTRPA  PARAAS+WRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANG+
Sbjct: 187 MLAWLPQLQRDTRPANVPARAASIWRQPLAWQVTFFLGTNSLVYYVVTAWLPSILAANGY 246

Query: 250 SAVEAGNLHGLMQLASALPGLLLVPLGPRMRDHRPVAVSMSAATVLSLIGLIAWPQASII 309
           SAV+AGNLHGLMQLASALPGLLLVPLGPR+RDHRPVAVSMSAATVLSL+GLIAWPQAS++
Sbjct: 247 SAVQAGNLHGLMQLASALPGLLLVPLGPRIRDHRPVAVSMSAATVLSLVGLIAWPQASLV 306

Query: 310 WVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAAAGPIFMGRLHDASG 369
           WVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAA GPI MGRLHDA+G
Sbjct: 307 WVPLFGFGTGAVLILGLAFVGTRVSTPPQAAALSAMAQSVGYLLAATGPIVMGRLHDANG 366

Query: 370 GWTLVLALCAGGAVLMGVLGWLAGRPGRVIGADTQ 404
           GWT VLALCAGGAVLMG LGWLAGRPGRVIGA  +
Sbjct: 367 GWTPVLALCAGGAVLMGWLGWLAGRPGRVIGASAK 401


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,098,074
Number of extensions: 39157
Number of successful extensions: 287
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,207,925
Effective search space: 385328075
Effective search space used: 385328075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)