BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0103.p (293 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 526 e-151 gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 150 1e-37 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 142 3e-35 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 135 3e-33 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 526 bits (1356), Expect = e-151, Method: Compositional matrix adjust. Identities = 271/298 (90%), Positives = 276/298 (92%), Gaps = 5/298 (1%) Query: 1 MATLYASLIEHDPDRLDAAVTALRVHTSQSERETPFHSHRKGQLVVALHGAVTCETAQGM 60 MATLYASL+EHDPDRLDAAVTALRVHTSQ ERETP HSHRKGQLVVAL GAVTCETAQGM Sbjct: 1 MATLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGM 60 Query: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPHAASMPDQCCTLALSPLLVQMICHLA 120 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP AASMP+QCCTLALSPLLVQMICHLA Sbjct: 61 WIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLA 120 Query: 121 EQRQDYAPHERTARLASVLVEELEHSQRHALPLHLPVPQHSRLRAIARHLAEQPADRSTV 180 EQRQDYAPHERTARLA+VLVEELEHSQRHALPLHLP PQHSRLRAIARHLAE PADR TV Sbjct: 121 EQRQDYAPHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRRTV 180 Query: 181 AEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQWLASGSSVQRVSQDLGYESV 240 A+WGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQ LASGSSVQRVSQDLGY+SV Sbjct: 181 AQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSV 240 Query: 241 SAFITMFRNTLGKPPARYMAQRQA-----PLARPASSPPASPAAPYFQPTRNASWKPN 293 SAFITMFR TLGKPPARYMAQRQA P P S PPA AAPYFQPTR ASWKPN Sbjct: 241 SAFITMFRKTLGKPPARYMAQRQAQRQAPPAVPPPSVPPAHAAAPYFQPTRQASWKPN 298 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 120/219 (54%), Gaps = 3/219 (1%) Query: 35 PFHSHRKGQLVVALHGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAP 94 P+HSHR+ QL+ L G + TA G W+VPPQ AVWIP G H +R+ C FI P Sbjct: 40 PWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHAVWIPSGREHQSRMLQAVTTCSAFIEP 99 Query: 95 -HAASMPDQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLASVLVEELEHSQRHALPL 153 HA + C LA+ PLL +++ Y H R L +L++E+ ++ +P Sbjct: 100 EHAPRVASSCQVLAVRPLLRELLIEATRMDPHYVLHSREENLIRLLLDEIGRAEE--IPA 157 Query: 154 HLPVPQHSRLRAIARHLAEQPADRSTVAEWGQRHAMSERSFARFVQAETGMSFGRWRRQI 213 H+P+P RL + P+ RS A+W + +SER+F+R A+TGM F +WR + Sbjct: 158 HVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHISERTFSRRFLAQTGMGFQQWRLRA 217 Query: 214 HLMLALQWLASGSSVQRVSQDLGYESVSAFITMFRNTLG 252 +M A+ LA G V ++ DLGYE +AF TMFR G Sbjct: 218 CVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRKMTG 256 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 6/234 (2%) Query: 34 TPFHSHRKGQLVVALHGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIA 93 P H H +G L+ A G + + G W+VPP +AVW+ GV HS + + Q LF+ Sbjct: 38 VPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSLAMPVTLQAYGLFVR 97 Query: 94 PHA-ASMPDQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLASVLVEELEHSQRHALP 152 A +P C + +SPLL ++I LA+ R++ +R L ++++EE+ + LP Sbjct: 98 QDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGALVMEEV--LTQPTLP 155 Query: 153 LHLPVPQHSRLRAIAR---HLAEQPADRSTVAEWGQRHAMSERSFARFVQAETGMSFGRW 209 HLP P +AR L + P D +T AEW R AM +++F R TGM+FG+W Sbjct: 156 FHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRRFLQSTGMTFGKW 215 Query: 210 RRQIHLMLALQWLASGSSVQRVSQDLGYESVSAFITMFRNTLGKPPARYMAQRQ 263 R+Q+ LM +L L G + +V+ GY+S SA+ T F GKPP+ + R+ Sbjct: 216 RQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSAFFPARE 269 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 135 bits (341), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 128/237 (54%), Gaps = 4/237 (1%) Query: 37 HSHRKGQLVVALHGAVTCETAQGMWIVPPQSAVWIPPGVPHSNRVTLDGQLCFLFIA-PH 95 HSHR+GQL+ A+ G + T QG+W+VPP A+W+PP V H + + L+I Sbjct: 40 HSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRALWVPPQVEHEILMLSKVSMRTLYINQAQ 99 Query: 96 AASMPDQCCTLALSPLLVQMICHLAEQRQDYAPHERTARLASVLVEELEHSQRHALPLHL 155 + +QC L +S LL ++I L + +DYAP R +A +++ EL + A+P+ + Sbjct: 100 GRELGEQCRLLEVSVLLRELILALLAEPRDYAPQSRAGHVAELILSELARAP--AIPVAI 157 Query: 156 PVPQHSRLRAIARHLAEQPADRSTVAEWGQRHAMSERSFARFVQAETGMSFGRWRRQIHL 215 P P RL+AI + P + ++A+W S R+ R ETG+ F W +Q+HL Sbjct: 158 PWPGDRRLQAICEAILADPGRQFSLADWAGMGGASVRTVIRLFPKETGLQFRHWVQQVHL 217 Query: 216 MLALQWLASGSSVQRVSQDLGYESVSAFITMFRNTLGKPPARYMA-QRQAPLARPAS 271 AL L+ G V V+Q LGY S SAF MFR L P Y+ Q + L+ PAS Sbjct: 218 SEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKALRTTPNHYLQRQERRRLSLPAS 274 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.130 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 886,574 Number of extensions: 34081 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 4 Length of query: 293 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 209 Effective length of database: 1,222,130 Effective search space: 255425170 Effective search space used: 255425170 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)