BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0102.p
         (529 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241...   712   0.0  

>gi|300313526|ref|YP_003777618.1| hypothetical protein Hsero_4241
           [Herbaspirillum seropedicae SmR1]
          Length = 520

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/464 (77%), Positives = 403/464 (86%), Gaps = 6/464 (1%)

Query: 1   METELKLLLAPEHTKAFIRHPLIKRYAQAAPRIKDQTGTYFDTPELLLRQNEAGLRVRRT 60
           METELKLL+AP HT+AFIRHPLIKRYA AAPRIKDQ GTYFDTP+LLLR N+AGLRVRRT
Sbjct: 1   METELKLLIAPAHTQAFIRHPLIKRYALAAPRIKDQIGTYFDTPDLLLRGNDAGLRVRRT 60

Query: 61  GNEYIQTLKAGGGVSGGLHQRNEWESLVEGEQPDLPVLRELAASDEAWARKVFSDKTAAQ 120
           G EYIQTLKAGGGVSGGLHQR+EWESLVEGEQPDL VLREL  SD  WARKVFS +TAA+
Sbjct: 61  GKEYIQTLKAGGGVSGGLHQRHEWESLVEGEQPDLAVLRELVDSDAPWARKVFSRQTAAR 120

Query: 121 LTPIFSTRIQRMVWDLDLPDGSEVECVLDQGTVEHGELKAEVCEIELELKQGEASALFDF 180
           LTPIFSTRIQRMVWDL L DG+EVECVLD+GTVEHG L+ EVCEIELELK GEA++L  F
Sbjct: 121 LTPIFSTRIQRMVWDLKLDDGAEVECVLDRGTVEHGALQTEVCEIELELKSGEATSLLGF 180

Query: 181 ALQLLQTLPLRIGIQSKAQRGYGLFHQARRAQQGIAATSSASRAKPLQLTRKMPVERAFL 240
           AL+LLQ LPLRIGIQSKAQRGY LFHQAR  Q   AA+SSA+RA+PLQLTRKMP+E+AFL
Sbjct: 181 ALRLLQDLPLRIGIQSKAQRGYTLFHQAR--QGDAAASSSATRAQPLQLTRKMPLEQAFL 238

Query: 241 AVVNNCVEQIQANDIADQDSDDIERLHQMRVGLRRLRSAFTLFEPVIALPASLAAEFDWV 300
           AV+ NCV QIQANDIADQDS DIERLHQMRVGLRRLRSAFTLF  VI LPA+L +EF+W+
Sbjct: 239 AVIGNCVAQIQANDIADQDSGDIERLHQMRVGLRRLRSAFTLFGQVITLPAALESEFEWI 298

Query: 301 SQAIGNARDWDVLATQTLTTLPPHAIGAIDLERVRHAALVEAGKEHALAVQAVASPRYTA 360
           ++AIG ARDWDVLAT+TL  L       +DL+ VR AAL++AGKEHALAV AVASPRYT 
Sbjct: 299 AEAIGTARDWDVLATETLPLLEMPTAAGVDLDAVRKAALIQAGKEHALAVHAVASPRYTV 358

Query: 361 LVLQFSRWLLTAGWRDG----LDEAGQEALSQALFRYARQMLRRDEKRLNKRGAHLEEND 416
           LVLQF+RWLL  GWR+      D+A   AL+Q L R+ARQML+RD+KRL+KRGAHLEE+D
Sbjct: 359 LVLQFNRWLLQRGWRENQGQEQDQAAPSALAQPLARFARQMLQRDQKRLSKRGAHLEESD 418

Query: 417 RARHRTRIAAKKMRYDIEFFQALYGEKSSRPYLKALSRLQDQLG 460
           RARHRTRIAAKKMRYD+EFFQALYGEK+SR YLKAL+RLQD LG
Sbjct: 419 RARHRTRIAAKKMRYDVEFFQALYGEKNSRAYLKALARLQDHLG 462


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,530,037
Number of extensions: 63729
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 439
Effective length of database: 1,193,720
Effective search space: 524043080
Effective search space used: 524043080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)