BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0101.p
         (456 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313527|ref|YP_003777619.1| transmembrane protein [Herbaspi...   811   0.0  

>gi|300313527|ref|YP_003777619.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 456

 Score =  811 bits (2096), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/456 (91%), Positives = 434/456 (95%)

Query: 1   MAGIGFELRKILRRDSLLSLMQAYSYAALISSGPWIMSIVGILVIGLVSYTVNMPKLAIV 60
           MAGIGFELRKIL+RDSLLSLMQAYSYAALISSGPWIMSIVGILVIG++SYTV  PK  IV
Sbjct: 1   MAGIGFELRKILKRDSLLSLMQAYSYAALISSGPWIMSIVGILVIGMLSYTVITPKNVIV 60

Query: 61  QFQVSITYVISLSLIFTGSFQLALTRFAADRLFEKDNHAILPNFHSVSMAVTVVGGVLGL 120
           QFQVSITYVISLSLIFTG FQLALTRFAADRLF KDNHAILPNFH+VS+ VTVVGGVLGL
Sbjct: 61  QFQVSITYVISLSLIFTGVFQLALTRFAADRLFVKDNHAILPNFHAVSLTVTVVGGVLGL 120

Query: 121 LAVAFLFPQQSALYRLLLLAAFIIMCNIWIATIFLSGMKQYKAIFWIYALGYTITVVAAL 180
            AVAFLFP QSALYRLLLLAAFIIMCNIWIATIFLSGMKQY+AIFWIYALGYTITV AAL
Sbjct: 121 AAVAFLFPHQSALYRLLLLAAFIIMCNIWIATIFLSGMKQYQAIFWIYALGYTITVAAAL 180

Query: 181 LLRPLGLEGLMGGFVIGQAVLLMAMMALILRNFPSDRFISFEFYERKKLYPSLMAIGLLY 240
           LLRPLGLEGLMGGFVIGQAVLLMAMMALILRNFPSDRFIS+EF++R+KLYPSLMAIGLLY
Sbjct: 181 LLRPLGLEGLMGGFVIGQAVLLMAMMALILRNFPSDRFISYEFFDRRKLYPSLMAIGLLY 240

Query: 241 NTAIWIDKAMFWYTPETSQAIIGPLRASVIYDLPVFLAYLSIIPGMAIFLLRMETDFVED 300
           N AIWIDKAMFWYT ETSQAIIGPLRASVIYDLPVFLAYLSIIPGMAIFLLRMETDFVED
Sbjct: 241 NLAIWIDKAMFWYTAETSQAIIGPLRASVIYDLPVFLAYLSIIPGMAIFLLRMETDFVED 300

Query: 301 YDAFYEAVRTGASLETIEKHRNGMVETVRLGLLEIIKIQAITTLLLMVTGESILKWLGIS 360
           YDAFYEAVR+GASLETIEKHRNGMVETVRLGL EIIKIQAI TL++MV GES+LKWLGIS
Sbjct: 301 YDAFYEAVRSGASLETIEKHRNGMVETVRLGLFEIIKIQAIATLVVMVAGESLLKWLGIS 360

Query: 361 TLYLPLLYIDVIAASLQVVLLGILNVFFYLDKRRIVLGLCGGLVVLNFALTALSLHLGPT 420
           TLYLPLLYIDVIAASLQVVLLG+LNVFFYLDKRRIVLGLC   VVLN A TA+SL LGPT
Sbjct: 361 TLYLPLLYIDVIAASLQVVLLGVLNVFFYLDKRRIVLGLCTAFVVLNVAFTAISLQLGPT 420

Query: 421 FYGFGFALAVFVVVLAGFVLLTRKLELLEYETFMLQ 456
           FYGFGFALAVFVVVLAG VLL+RKLELLEYETFMLQ
Sbjct: 421 FYGFGFALAVFVVVLAGCVLLSRKLELLEYETFMLQ 456


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.145    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,063,541
Number of extensions: 36196
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,203,190
Effective search space: 442773920
Effective search space used: 442773920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)