BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0100.p (541 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313528|ref|YP_003777620.1| glycosyltransferase [Herbaspiri... 951 0.0 gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1 pr... 67 3e-12 gi|300312062|ref|YP_003776154.1| membrane-anchored group 1 glyco... 65 1e-11 >gi|300313528|ref|YP_003777620.1| glycosyltransferase [Herbaspirillum seropedicae SmR1] Length = 543 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/536 (87%), Positives = 494/536 (92%), Gaps = 1/536 (0%) Query: 7 KPVAGDAS-YQRRAKDCDVMLLLEGTFPYVSGGVSSWVNQIIRGFPEIRFGLCFIGSRPE 65 P DA YQRRA CDVMLLLEGTFPYVSGGVSSWVNQIIRGFP +RFGLCFIGSR + Sbjct: 8 SPAPADADRYQRRADSCDVMLLLEGTFPYVSGGVSSWVNQIIRGFPHLRFGLCFIGSRRQ 67 Query: 66 DYGTPKYALPDNVVHLETHFIHEHLSATQVVRSRGDAAAFERIDELHAMFRAYDRTDATS 125 DYG PKYALPDNVVHLETH+IHE+LSATQVVRSRGDA AF +D+LH M RAYDR+D+TS Sbjct: 68 DYGAPKYALPDNVVHLETHYIHENLSATQVVRSRGDAQAFAMMDQLHGMLRAYDRSDSTS 127 Query: 126 HSALVAQLGELIPMMEDGGKMDQDTFLFSKRSWDYLASQYRIFCTDPSFVDYFWTVRIMH 185 HSAL AQL ELIPMM DGGK+DQD FLFSK+SWDYL +QYR FCTDPSFVDYFWTVRIMH Sbjct: 128 HSALAAQLAELIPMMADGGKLDQDAFLFSKQSWDYLTAQYRTFCTDPSFVDYFWTVRIMH 187 Query: 186 QPVWTLARVARQLIPARCYHTISTGYAGFLGALMKMQTGRPLILSEHGIYTKERKIDLFQ 245 QPVWTLARVARQLIPARCYHT+STGYAGFLG+LMKMQTGRPLILSEHGIYTKERKIDLFQ Sbjct: 188 QPVWTLARVARQLIPARCYHTVSTGYAGFLGSLMKMQTGRPLILSEHGIYTKERKIDLFQ 247 Query: 246 SEWIRDNRNVFEKDASQIPYFREMWIRFFEALGRLCYQASNDIVALYETNRLRQIHDGAP 305 SEWIRDNRNVFEKDASQIPYFREMWIRFFEALGR+CYQASN IVALYETNRLRQ+ DGAP Sbjct: 248 SEWIRDNRNVFEKDASQIPYFREMWIRFFEALGRMCYQASNQIVALYETNRLRQVIDGAP 307 Query: 306 AERTRNIPNGIDLPRLSKLRALRSENIPPVLCLLGRVVPIKDVKTFIRAMRTVVNQYPEA 365 ERTRNIPNGIDLPRLS LRA RSE IPPVLCLLGRVVPIKDVKTFIRAMRTVVNQYPEA Sbjct: 308 PERTRNIPNGIDLPRLSALRAQRSEKIPPVLCLLGRVVPIKDVKTFIRAMRTVVNQYPEA 367 Query: 366 EAWIAGPEDEDPAYAGECHAIADGLGLTDKVKFLGFQKIDELMPKIGLVVLSSISEALPL 425 EAWIAGPEDEDP+YA ECHAIA+GLGL DKVKFLG+QKIDELMPKIGLVVLSSISEALPL Sbjct: 368 EAWIAGPEDEDPSYAAECHAIAEGLGLLDKVKFLGYQKIDELMPKIGLVVLSSISEALPL 427 Query: 426 VLLEGFAAGVPAVATDVGSCRQLLYGLSEEDQALGAAGDVVGIAQPQALADAALKLLTDP 485 VLLEGFAAGVP VATDVGSCRQL+YGLSEEDQALGAAGDVVGIA+PQALA AALKLLTDP Sbjct: 428 VLLEGFAAGVPGVATDVGSCRQLIYGLSEEDQALGAAGDVVGIAEPQALAQAALKLLTDP 487 Query: 486 QRWHAAQAAGIARVERYYTQDMMFGAYRELYQRSLAQGGPDSDAASGQPLRCPVRH 541 QRW+AAQAAGIARVERYYTQ+MMFGAYRELY +LA+ G + A+ LRCPV+H Sbjct: 488 QRWYAAQAAGIARVERYYTQEMMFGAYRELYDNALAEQGAAATGAAATALRCPVQH 543 >gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1 protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 74/288 (25%), Positives = 124/288 (43%), Gaps = 34/288 (11%) Query: 245 QSEWIRDNRNVFEKDASQIPYFREMWIRFFEALGRLCYQASNDIVALYETNRLRQIHDGA 304 E RD R+ ++A R + + F++ CY A + + + + ++ Sbjct: 113 HGEHGRDARDPHGRNARH-NLLRRLVLPFYD-----CYYAVSADLRDWLRDTIK-----V 161 Query: 305 PAERTRNIPNGIDLPRLSKLRALRSENIP--PVLCLL----GRVVPIKDVKTFIRAMRTV 358 PA++ + NG+D R + E P P C++ GRV +KD T + A + Sbjct: 162 PADKNLLLANGVDTARFHPPADGQREATPELPAGCMVFGAVGRVQDVKDHATLVNAFIAL 221 Query: 359 VNQYPEAEA----WIAGPEDEDPAYAGECHAIADGLGLTDKVKFLGFQ-KIDELMPKIGL 413 + P+ A I G PA + A G+ D V G + ++ +M + + Sbjct: 222 LAMRPQQRARLRLAIVGEGPLLPALRAQVQAA----GIADLVWLPGARMDVEVMMRRFSV 277 Query: 414 VVLSSISEALPLVLLEGFAAGVPAVATDVGSCRQLLYGLSEEDQALGAAGDVVGIAQPQA 473 +LSSI+E +P+ +LE A G+P ++T VG +++ GA G + A Sbjct: 278 FMLSSIAEGVPVTILEAMATGLPVISTAVGGVPEVV--------TEGATGQLTPAGDAAA 329 Query: 474 LADAALKLLTDPQRWHAAQAAGIARVERYYTQDMMFGAYRELYQRSLA 521 LA A + DP AAG+ R R ++ M AY +Y R LA Sbjct: 330 LARAMAAYVDDPALAARHGAAGLERCRRQHSMAAMLQAYAGMYDRMLA 377 >gi|300312062|ref|YP_003776154.1| membrane-anchored group 1 glycosyltransferase [Herbaspirillum seropedicae SmR1] Length = 406 Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 114/271 (42%), Gaps = 39/271 (14%) Query: 272 RFFEALGRLCYQASNDIVALYETNRLRQIHDGAPAERTRNIPNGIDL----------PRL 321 R AL + ++ + + E R G P + IPN +++ P L Sbjct: 148 RLTRALETYALKRADAVTTICEGLRADIAARGVPLAKMTVIPNAVNIDDFSLGQQADPAL 207 Query: 322 SKLRALRSENIPPVLCLLGRVVPIKDVKTFIRAMRTVVNQYPEAEAWIAGPEDEDPAYAG 381 ++ L + + L +G + + ++A+ ++ P+ + G ++ A Sbjct: 208 ARQLGLEGKTL---LGFIGSFYAYEGLPVLVQALPQLLAGNPDVRLLLVGGGPQERA--- 261 Query: 382 ECHAIADGLGLTDKVKFLG----------FQKIDELM-PKIGLVVLSSISEALPLVLLEG 430 HA+A LG++DKV F G + ID L+ P++ + + ++ PL LE Sbjct: 262 -LHALAAELGVSDKVVFAGRVPHEQVQRYYNLIDVLVYPRLKMRLTDLVT---PLKPLEA 317 Query: 431 FAAGVPAVATDVGSCRQLLYGLSEEDQALGAAGDVVGIAQPQALADAALKLLTDPQRWHA 490 A G VA+DVG R+L+ G G + P+ALA L LL +P RW Sbjct: 318 MAQGRLVVASDVGGHRELISD--------GRTGVLFAAGSPEALAQKVLALLAEPARWPQ 369 Query: 491 AQAAGIARVERYYTQDMMFGAYRELYQRSLA 521 +AAG VE Y+++Y R +A Sbjct: 370 LRAAGRHFVETERNWAASVARYQQIYPRLVA 400 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,785,328 Number of extensions: 76409 Number of successful extensions: 227 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 224 Number of HSP's successfully gapped: 3 Length of query: 541 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 451 Effective length of database: 1,193,720 Effective search space: 538367720 Effective search space used: 538367720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)