BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0098.p
         (500 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313530|ref|YP_003777622.1| transmembrane protein [Herbaspi...   795   0.0  

>gi|300313530|ref|YP_003777622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 491

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/487 (82%), Positives = 434/487 (89%), Gaps = 1/487 (0%)

Query: 15  PASGRPGGGQ-PWAASPRPAPTAAQKRQKFWARLFTRFDTDSGSPRKAALRIVETIALVA 73
           P  GR  G Q PWAA    A TA QKRQKFW+R FTRFDTDSGSPRKA LRI+ET+ALV 
Sbjct: 5   PRQGRGAGPQRPWAAGMSTALTAGQKRQKFWSRFFTRFDTDSGSPRKAVLRIIETVALVL 64

Query: 74  AALAVAWWLSPEDPFGLEAQFPWLWLMPAILAMRYGSTLGVVAVATMLGGWYLLMHGHHE 133
           AAL  A W++PEDP G+ AQFPWLWL+PAILAMRYGSTLGVVAVATM+ GWYLL+HGH  
Sbjct: 65  AALLFAHWVAPEDPMGIRAQFPWLWLVPAILAMRYGSTLGVVAVATMMAGWYLLVHGHQA 124

Query: 134 DEAQAVVSAAQAFPQAYFLGGLVLTLLCGQFAEVWNARSRRLRGVNAYLEERLTMLTKNH 193
            EA AV +AAQAFPQ+YFLGGLVLTLLCGQFAEVWNARSRRLR +NAYL+ERLTMLTKNH
Sbjct: 125 SEADAVAAAAQAFPQSYFLGGLVLTLLCGQFAEVWNARSRRLRAINAYLDERLTMLTKNH 184

Query: 194 FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQYLLDPGRMPAPDAFLQILVQSCQVE 253
           FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQ LLDP RMPAPDAFLQIL QSCQV 
Sbjct: 185 FLLRLSHERLEQDLLSKPLTLRESLDRMRALTLTQILLDPSRMPAPDAFLQILAQSCQVA 244

Query: 254 SASVFACDVHGHVLPEAVASVGKVTPLAADDPLVRYCLTQQKLGHIQTESLNQTLRNQSR 313
           SA+V+ CD  GH+ PE  ASVGKV+ LAADD LVRYCL Q+KLGHIQTESLNQ LRNQSR
Sbjct: 245 SAAVYVCDAAGHITPEPAASVGKVSELAADDALVRYCLAQRKLGHIQTESLNQNLRNQSR 304

Query: 314 YLVCAPLRNYEGRQFGLLVVEQLPFLALNEDTLQLMSVLIDYYADGIEMGDSARAILQQL 373
           YLVCAPL N++GR FGLLVVEQLPF+ALNEDTLQLMSVLIDYYADGIE+G +AR+ILQQL
Sbjct: 305 YLVCAPLLNFDGRLFGLLVVEQLPFVALNEDTLQLMSVLIDYYADGIEVGGTARSILQQL 364

Query: 374 PTCPPELAVDLVRLHRLKRSTDIDSSLVALVFGDDELSRDMYDQVRRLKRAADVVWTYKA 433
           PTCPPELAVD+VRLHRLKRSTDIDSSLVALVFGDDE+SRDM+DQ+RRLKRAADVVWTYKA
Sbjct: 365 PTCPPELAVDVVRLHRLKRSTDIDSSLVALVFGDDEISRDMFDQIRRLKRAADVVWTYKA 424

Query: 434 GGRNVLMTLLPLAGPAAVDGYLMRIETASHAQFDNKSLANFAAAHTAALGSDEPMRLLIN 493
           GGRNVLMTLLPLAG AAVDGYLMR+E AS AQF  KSLAN+AA HTAA+G DEP RLL N
Sbjct: 425 GGRNVLMTLLPLAGAAAVDGYLMRVEAASQAQFGAKSLANYAAIHTAAIGGDEPSRLLPN 484

Query: 494 LVERCAA 500
           LVERCAA
Sbjct: 485 LVERCAA 491


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,431,136
Number of extensions: 55634
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 411
Effective length of database: 1,198,455
Effective search space: 492565005
Effective search space used: 492565005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)