BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0097.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313531|ref|YP_003777623.1| lipoprotein [Herbaspirillum ser...   280   5e-77

>gi|300313531|ref|YP_003777623.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score =  280 bits (717), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 152/169 (89%), Gaps = 1/169 (0%)

Query: 29  CSTADIGPTPVVPADARWGLLPFANHTETPQAGLRAESISESILRANGLAELRRYPASLN 88
           CST DIG  P +PA+ARWGLLPFANHTETPQAGLRAE+I+E+ILR NG+ EL+ YPASLN
Sbjct: 25  CSTTDIGNAPTLPANARWGLLPFANHTETPQAGLRAEAIAETILRTNGMTELQHYPASLN 84

Query: 89  NETLFEPMDRKQLDAALDWARSENITYALSGTVDEWRYKVGIDGEPAVGLTLQLIEVSSG 148
           NETLFEPMDRKQLDAAL WARSENI YALSG+VDEWRYKVGIDGEPAVG+TLQLIEV++G
Sbjct: 85  NETLFEPMDRKQLDAALQWARSENIAYALSGSVDEWRYKVGIDGEPAVGMTLQLIEVATG 144

Query: 149 KVVWAAAGAKSGWSREALSAVAQKLMRSLLSPLRA-LARTSAAVNAANA 196
           KVVWAAAGAKSGWSREALSAVAQKL R+LL+PL A ++ T+ AV A  A
Sbjct: 145 KVVWAAAGAKSGWSREALSAVAQKLARTLLAPLSATISDTTPAVPATGA 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.127    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 579,295
Number of extensions: 23973
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)