BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0096.p (2304 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313532|ref|YP_003777624.1| TPR repeat containing protein [... 2029 0.0 gi|300313533|ref|YP_003777625.1| signal peptide protein [Herbasp... 1558 0.0 >gi|300313532|ref|YP_003777624.1| TPR repeat containing protein [Herbaspirillum seropedicae SmR1] Length = 1349 Score = 2029 bits (5257), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1047/1351 (77%), Positives = 1168/1351 (86%), Gaps = 16/1351 (1%) Query: 968 LFSPWTIAGFALAVGTVLALVYPKVSLQQRLEVANASGKSDQLTVEYIKVFLKAQPGNAA 1027 +FSPWTIAGFALAVGTV ALVYPKVSLQQRLEVANASG+ DQLT+EY+KVFLKA+PGN A Sbjct: 1 MFSPWTIAGFALAVGTVFALVYPKVSLQQRLEVANASGRGDQLTIEYLKVFLKAKPGNTA 60 Query: 1028 LRAELVKQMIDLGQFGEARAQLALLQMDSSAAARLSAAWLEYRIRQQEVFALPKDAPERT 1087 LRAELVKQMIDLGQF EAR QLA LQM + AARL+AAWLEYRIRQQE FALP +PERT Sbjct: 61 LRAELVKQMIDLGQFAEARQQLAFLQMGTDPAARLAAAWLEYRIRQQEAFALPATSPERT 120 Query: 1088 FLLAQLREQLNVLMTYPLTAQQWLTLSQDALALGDGESARAAFARLLADRSTADISYAEA 1147 LLA+LR QL LMTYPL+AQQWL LSQDALALGD E+AR AF RLLA+RST D+ Y EA Sbjct: 121 RLLAELRIQLQQLMTYPLSAQQWLGLSQDALALGDVEAARVAFERLLAERSTRDLPYGEA 180 Query: 1148 VRLGQQSLGVGDYHSSAAFYLLAMQHAGSLAARRENFLDAMRTLQAGGFYQEALAAAEAN 1207 VRLGQQSLG+GDY SSA+FYLLAMQHAGSL ARR+NF+ A+R LQAGG YQEAL A+AN Sbjct: 181 VRLGQQSLGMGDYRSSASFYLLAMQHAGSLEARRDNFITALRNLQAGGLYQEALEVADAN 240 Query: 1208 LGPLANDKTVLLYLTRLAQAANRPDAAERYVKQLLQLSMARVPSPLAAARAGQGGVVAVS 1267 LGPLANDK LL+LTRLAQAANRP+AAERYV+QLLQLSM R + LA RAGQG + Sbjct: 241 LGPLANDKATLLFLTRLAQAANRPEAAERYVRQLLQLSMGRAAATLA--RAGQGSAALAT 298 Query: 1268 -----MQDFRQSLQQMQSLLHHPRRLHN---ELQRAMQQGRLLRVAGEN--QPSAADMAS 1317 M +F +SL+ ++LL P++ H +Q AM+Q R++RVA + QP AA++ + Sbjct: 299 VHFQQMSEFTRSLRLTRALLQQPQQPHQLQQRMQMAMRQARVIRVAAADPSQPPAAEVNA 358 Query: 1318 SRALARLPFDEEIYTLAYNVFLANRNLVDARLLAQSAVRQRPDDAAWRKRLAEVSEWSGV 1377 SR LARLPFD+EIYTLAYNVFL NRNL DARLLAQSAVRQRPDDAAWRKRLAEVSEWSGV Sbjct: 359 SRELARLPFDDEIYTLAYNVFLGNRNLTDARLLAQSAVRQRPDDAAWRKRLAEVSEWSGV 418 Query: 1378 PEQATPQWLAYARLSGDEAAWDNVLRAAAGTFEQDMLVEALQHKMQVEPGNAQWVNLLVA 1437 PEQATP WLAYARL+ DEAAWDNV+R AAGTFEQD+L EALQHKMQVEPG+ +WVNLLVA Sbjct: 419 PEQATPHWLAYARLTNDEAAWDNVMRIAAGTFEQDILTEALQHKMQVEPGDPKWVNLLVA 478 Query: 1438 QYENIGQPERAAALLEERLRGK----PARTPDAATERNGTMEALAKLYLRMGRDDAALAT 1493 QYEN+GQPERAAALLE RLR +AATERNG M+ALAKLYLRMGRDD A A Sbjct: 479 QYENVGQPERAAALLEARLRQNRTAAANANANAATERNGEMDALAKLYLRMGRDDDANAV 538 Query: 1494 LRRQREEFGPSAANALMTANPLYLRGRLDDALEVLRAAARVAPDGNADFWRTYAEVARYM 1553 L RQR+EFGPSAANALM AN LYLRGR + ALE+LR AA VAP GNADFWRTYAE+ARY+ Sbjct: 539 LVRQRQEFGPSAANALMAANLLYLRGRGEQALELLRQAAPVAPPGNADFWRTYAELARYL 598 Query: 1554 GLNEEARIGYDRLLAGDQAAEGDMSNMMVVIQDREPRAAAELAEFGFHRTGVPNFAVQAL 1613 GL+EEAR GYD+LLA +QAAEGDMSN+MVVIQ+ EPRAAAELAEFGF RT V NFAVQAL Sbjct: 599 GLDEEARRGYDQLLATNQAAEGDMSNLMVVIQEHEPRAAAELAEFGFRRTSVANFAVQAL 658 Query: 1614 TYRLRLNDLEGARSFLASLTPQQNAALEKYVPFLSVRSSVKQLQRDLEGARADMRLALSL 1673 TYR+RLNDL+G + FL S+TPQQNAALEKYVP+LSVRS+ +Q++ D GARADMRLALSL Sbjct: 659 TYRMRLNDLDGGQRFLDSITPQQNAALEKYVPYLSVRSAFRQMKHDYAGARADMRLALSL 718 Query: 1674 APRAADVRAETLWVLIATRDAALLNRAMTMWAHDAETTPQLWGPYAAANMSLNRQNQALH 1733 +PR+A+VRAE +W+LIATRD LLNRA+T+WA DAE PQLWGP+AAAN+SLNRQN ALH Sbjct: 719 SPRSAEVRAEMIWILIATRDTELLNRALTLWAADAENAPQLWGPFAAANISLNRQNVALH 778 Query: 1734 WFRKSGFPHDDYLWLMSYAEALDATGQPDLAWRIRRHAWLEVRNPQLLRNVPPGQLHEWR 1793 WFRKSGFP +DYLWL+SYAEALDA+GQPDLAWRIRR AW+E+R+P LRN+PP QL EWR Sbjct: 779 WFRKSGFPQNDYLWLLSYAEALDASGQPDLAWRIRRRAWIELRDPARLRNIPPAQLREWR 838 Query: 1794 DRLAALAPLFMSADDSARVMRALLRSDVTLPPRPDGQSNPANGPALLKDMQQAARSDAVQ 1853 DRLAALAPLFM AD S +VMRALL SDVT R D PA+GPALLKDMQ AARSDA Q Sbjct: 839 DRLAALAPLFMPADASNKVMRALLDSDVTRLVRSDAAPPPADGPALLKDMQAAARSDARQ 898 Query: 1854 RSQDEVRSAQLAEGPAALFAPTTDTGQRPGDDARLSSGARELALAYAMNQNQSDLARTWL 1913 +QD+ SA+L +GPAALFAPT DTGQRP DDARLS+ ARELALAYAMNQ SDLARTWL Sbjct: 899 HAQDQDVSARLMDGPAALFAPTGDTGQRPRDDARLSASARELALAYAMNQGDSDLARTWL 958 Query: 1914 ATRFAKQLDKPLWGELAMALGNDDRQRLNAMLDNLADWLPMYDRVEAARVAGRVGLAQTL 1973 ATRFA QLDKPLWGELAMALGNDDRQ LN +LDNLADWLPMYDR+EAARVAGRV LAQTL Sbjct: 959 ATRFATQLDKPLWGELAMALGNDDRQGLNRLLDNLADWLPMYDRIEAARVAGRVPLAQTL 1018 Query: 1974 AFDQLERLPADDELHGRLTGLVTDEPPRFSAGYTATREFPLATKLFTVNTGVALTPGTRF 2033 AFDQL+RLP DDELH RLTGLVTD+P +FSAGYTATREFPLATKLFT+++GV LTPGTR Sbjct: 1019 AFDQLQRLPGDDELHARLTGLVTDDPAKFSAGYTATREFPLATKLFTLSSGVNLTPGTRL 1078 Query: 2034 SFGYTERHQTVDDTTLLGDVPAVDRLFEFTLRRRIEDGFVSASLQHRDAMTSFNGLRLEF 2093 FGY ER Q+VDD+TLLGDVPAVDRL+ FTLRRRIE+GFVSA+LQHR AMTSFNGLRLEF Sbjct: 1079 DFGYIERRQSVDDSTLLGDVPAVDRLYSFTLRRRIEEGFVSAALQHRQAMTSFNGLRLEF 1138 Query: 2094 SQQLTPKLTLSGNGGLNLAAIDSALIRVGGRRSGGELNLNLQLSRTEYLRLGGGLQRYQT 2153 S+QLTPKLTLSGNGG+NL+A DSA +RVG +R GGELNLN+QLSRTEYLRLGGGLQ Y + Sbjct: 1139 SRQLTPKLTLSGNGGINLSATDSAFMRVGAKRDGGELNLNVQLSRTEYLRLGGGLQHYAS 1198 Query: 2154 QSGTALGNGRTLNAEIGTHLRVEYPNLTLRGFVNDAKFSDRGASDDQIARLVPAGNDPTG 2213 QSGT+LG GRTLNAE+GTH RVEYPNLTLR FVNDAKF+D G SD IARLVP G DP Sbjct: 1199 QSGTSLGRGRTLNAEVGTHFRVEYPNLTLRAFVNDAKFTDYGNSDSLIARLVPVGTDPAS 1258 Query: 2214 FRYMPLDARSWGVALGAGTVIENAYTRAWRPYAEFGLTRTSDIGWGRNLRAGVAGSVLGQ 2273 FRYMPLD+RSWG ALGAGTV+ENAYTRAWRPYAEFG+TRTSDIGWGRNLRAG+AGSV+GQ Sbjct: 1259 FRYMPLDSRSWGAALGAGTVVENAYTRAWRPYAEFGMTRTSDIGWGRNLRAGIAGSVVGQ 1318 Query: 2274 DVLSVAAQSTSATPNTPQRGFELNVLYKWFY 2304 DVLS+ AQST+ATPN PQRGFELNVLY+WFY Sbjct: 1319 DVLSIGAQSTAATPNNPQRGFELNVLYRWFY 1349 >gi|300313533|ref|YP_003777625.1| signal peptide protein [Herbaspirillum seropedicae SmR1] Length = 989 Score = 1558 bits (4034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 748/835 (89%), Positives = 786/835 (94%), Gaps = 4/835 (0%) Query: 67 YVSLGEVQPSRPYYKQMPPGLLKGDNAAWGSRVIDQTAPGWRDFFLDKIVAPLWAQGWRG 126 YVSLGEVQPSRPYYKQ+PPGLL+GDNAAWGSRVIDQ APGWRDFFLDKI+APLWAQGWRG Sbjct: 101 YVSLGEVQPSRPYYKQLPPGLLRGDNAAWGSRVIDQNAPGWRDFFLDKIIAPLWAQGWRG 160 Query: 127 FFLDTLDSYQLFAKTDAERAAQTQAMIATLREFKRRYPEAKLILNRGFELFPDVAPLTYA 186 FFLDTLDSYQLFAKTDAERA QTQAMIATLREFKRRYPEAKLILNRGFEL P++APLTYA Sbjct: 161 FFLDTLDSYQLFAKTDAERAVQTQAMIATLREFKRRYPEAKLILNRGFELLPEIAPLTYA 220 Query: 187 VAAESLYRGYDAGRRSYGAVTDNDRAWLSGQLRTIRDRYRLPAIAIDYVDPFQPGARALA 246 VAAESLYRGYDAGRRSYG V DNDRAWL GQ++T R+RY LP IAIDYVDP Q GARALA Sbjct: 221 VAAESLYRGYDAGRRSYGPVKDNDRAWLMGQMQTARERYHLPVIAIDYVDPQQSGARALA 280 Query: 247 RETAKKISADGFLPWVADGTLMSMGVSSVELVPRNVLVLLDVAQGDDLHTTEAQRFLGIQ 306 RETA+KISADGF+PWVADG L+SMGVSSVELVPRNVLVLLDVA+GDDLHTTEAQRFLGIQ Sbjct: 281 RETAQKISADGFIPWVADGGLVSMGVSSVELVPRNVLVLLDVAEGDDLHTTEAQRFLGIQ 340 Query: 307 LNHLGLRYEFREVGREGLPTEPLAGRYAGVVTWFRSGTDHQRLGPWIGQRIKEGVPVAIF 366 LNHLGLRYEFR+VGREGLPTEPLAGRYAGVVTWFRSGT+HQRLGPWIGQRIKEGVPVAIF Sbjct: 341 LNHLGLRYEFRDVGREGLPTEPLAGRYAGVVTWFRSGTNHQRLGPWIGQRIKEGVPVAIF 400 Query: 367 NAFGFQMTKLSAGMLGLTSFSAPAPEQLEVTQADSELMGFETKPRVDRTQLELVRLTDPA 426 +AFGFQMTKLSAGMLGLTSFSAP PEQL+VT D ELMGFET+PRVDRTQLE VRL+DPA Sbjct: 401 SAFGFQMTKLSAGMLGLTSFSAPVPEQLDVTHYDPELMGFETRPRVDRTQLENVRLSDPA 460 Query: 427 AKSLLRMKDGRNNIYDAAAIMPWGGFALAPFATTTLQVMDPPRWVLQPMLFLKRALRLPA 486 A LLRMKDGR+N YDAAAI PWGGFALAPFA TT V+DPPRWVLQPMLFLKRALRLP Sbjct: 461 APVLLRMKDGRDNTYDAAAITPWGGFALAPFAITTAPVIDPPRWVLQPMLFLKRALRLPD 520 Query: 487 IPVPDVTTEGGRRIQTSHLDGDGFPSKAEYPGSPFAVEVLQREIWDRYRFPVTVSVVEGE 546 + VPDVTTEGGRRIQTSHLDGDGFPSKAEYPGSPFAVEVLQREIWDRYRFPVTVSVVEGE Sbjct: 521 MAVPDVTTEGGRRIQTSHLDGDGFPSKAEYPGSPFAVEVLQREIWDRYRFPVTVSVVEGE 580 Query: 547 LSPQGVYPQLSAQTTALARKMFTLPYVEPASHSFSHPFNWADAMYDTRTADINQMDGDAS 606 LSPQGVYPQLSAQTTALARKMFTLPY+EPASHSFSHPFNWADAM+DTRTADI QMDGDAS Sbjct: 581 LSPQGVYPQLSAQTTALARKMFTLPYIEPASHSFSHPFNWADAMHDTRTADITQMDGDAS 640 Query: 607 RTLDIPNYKFNLQREIKGSMDYINKTLLPPGKKAEVFLWTGNCVPPPEAIAQTYLDGFLN 666 RTL+IPNYKFNLQREIKGSMDYIN TLLPPGKKAEVFLWTGNCVPPPEAIAQTYLDG+LN Sbjct: 641 RTLEIPNYKFNLQREIKGSMDYINNTLLPPGKKAEVFLWTGNCVPPPEAIAQTYLDGYLN 700 Query: 667 MNGGDTMITRSRNTWTDIAAQGVRKQGWYQVFAPNQDENVYTGNWTGPFYGFERAIESYE 726 MNGGDTMIT+SRNTWTDIAAQGVRKQGWYQVFAPNQDENVYTGNWTGPFYGFERAIESYE Sbjct: 701 MNGGDTMITKSRNTWTDIAAQGVRKQGWYQVFAPNQDENVYTGNWTGPFYGFERAIESYE 760 Query: 727 LTGEPVRFKAVDIYYHFYAGTKPASVAALHKIHRWAEAQPFTRLYVSQYIRKVIDFENTS 786 LTGEPVRFKAVDIYYHFYAGTKPASVAALHKIHRWA+AQPFTRLYVSQYIRKVIDFENTS Sbjct: 761 LTGEPVRFKAVDIYYHFYAGTKPASVAALHKIHRWAQAQPFTRLYVSQYIRKVIDFENTS 820 Query: 787 IARTADGTLVYRTGEYLRTLRIPADAPDVDLSQPGIAGIAPGPSGRYLITSAGEVRIRQR 846 IARTADG LVYRTG +LRTLR+P PD DLS PGIAGIAPGPSGRYLITSA EVR++ Sbjct: 821 IARTADGALVYRTGAHLRTLRLPPGTPDYDLSAPGIAGIAPGPSGRYLITSAAEVRLKPP 880 Query: 847 SSSEQSDASPALPMLLEAAGQVGDFQRSINGNKAELRFSLTANGVTTFSVSGARA 901 + A+ ALPMLLEA GQVGDFQRS+NGN+ ELRFSL ANG +TFSV+GAR+ Sbjct: 881 AQP----AAQALPMLLEAGGQVGDFQRSVNGNQVELRFSLLANGPSTFSVAGARS 931 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 7,289,519 Number of extensions: 317873 Number of successful extensions: 1018 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 1008 Number of HSP's successfully gapped: 2 Length of query: 2304 Length of database: 1,619,870 Length adjustment: 101 Effective length of query: 2203 Effective length of database: 1,141,635 Effective search space: 2515021905 Effective search space used: 2515021905 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 139 (58.2 bits)