BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0095.p (248 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 432 e-122 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 138 5e-34 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 110 2e-25 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 74 1e-14 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 62 6e-11 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 220/248 (88%), Positives = 228/248 (91%) Query: 1 MNTDPSAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGI 60 M+T+PS KSSSQIAVRITEAILAKQLAPGTRLGEQQLADLF VSRTQVREALT LMARGI Sbjct: 1 MSTNPSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGI 60 Query: 61 VTVSARRGWFVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAA 120 VTVSARRGWFVIEPT QAREAFEARRVIELGLLRQAR+RP+ AIGQLR+HIAREEAA Sbjct: 61 VTVSARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAA 120 Query: 121 IAGADVGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 IAGADVGARSYLLGDFHVCL ECLGNSLL+ETLRDLTARTTLTAMLHQSSEQAEDSCSEH Sbjct: 121 IAGADVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEH 180 Query: 181 VLIVEALERGDLERAEQLMQDHLQHVESGLTQVRSSDPLEPLRQALASVSRQGAAGETGL 240 VLIVEALERGDLE+AEQLM DHLQHVESGL QVRSSDPLEPLRQALASVSRQGAA + Sbjct: 181 VLIVEALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALASVSRQGAASDAKT 240 Query: 241 PRQESKRP 248 R K P Sbjct: 241 VRPPGKGP 248 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 138 bits (347), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 80/211 (37%), Positives = 118/211 (55%), Gaps = 5/211 (2%) Query: 2 NTDPSAKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIV 61 ++ P+ SS IA I I A++L PG +L E+ LA ++ VSRT++R AL L +V Sbjct: 3 DSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLV 62 Query: 62 TVSARRGWFVIEPTAEQAREAFEARRVIELGLLRQ--ARVRPISAQAIGQLRDHIAREEA 119 + +G FV +PT E+ R F RR +E ++R+ AR P + +L H+ E Sbjct: 63 DLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATP---EDYARLEAHLELERQ 119 Query: 120 AIAGADVGARSYLLGDFHVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCSE 179 A++ ++ RS LL DFH+ L +GN +L++ L L R+ L ML+QS+ A S E Sbjct: 120 AVSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEE 179 Query: 180 HVLIVEALERGDLERAEQLMQDHLQHVESGL 210 H + A GD ERA +LM+ HL HVE L Sbjct: 180 HRAFIAAARAGDTERAMELMEHHLLHVEQAL 210 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 110 bits (274), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 5/194 (2%) Query: 17 ITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVTVSARRGWFVIEPTA 76 I +AI+ +L P T+L EQ L ++ +R VR+ L RL A G+V + A RG F+ P+ Sbjct: 35 IYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAFIASPSP 94 Query: 77 EQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAAIAGADVGARSYLLGDF 136 + R+ FE R ++E +L + + Q G LR + E D L F Sbjct: 95 AEVRDMFELRNILEHAVLEKLGHTAGTRQIAG-LRRMVEEERDCYLNGDRPRWIRLSAQF 153 Query: 137 HVCLCECLGNSLLSETLRDLTARTTLTAMLHQSSEQAEDSCS--EHVLIVEALERGDLER 194 H+ L E GN+LL ETLR L +RTTL M+ ++ ++CS EH ++EALE+GD++ Sbjct: 154 HLALAELTGNALLVETLRKLVSRTTL--MIAKTEAPGHNACSFDEHETVLEALEKGDIKA 211 Query: 195 AEQLMQDHLQHVES 208 A+ M HL E Sbjct: 212 AQAHMAHHLHLCED 225 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 90/188 (47%), Gaps = 2/188 (1%) Query: 17 ITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVTVSARRGWFVIEPTA 76 I E I +L+PG L E LA+ FGVSRT +REAL +L + GIV + RRG V E Sbjct: 15 IEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGAIVAEIGP 74 Query: 77 EQAREAFEARRVIELGLLRQARVRPISAQAIGQLRDHIAREEAAIAGADVGARSYLLGDF 136 +Q E FE E R A R A+ L H A + A A D A YL F Sbjct: 75 QQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDAN-DPDAYFYLNEAF 133 Query: 137 HVCLCECLGNSLLSETLRDLTARTTLTAMLH-QSSEQAEDSCSEHVLIVEALERGDLERA 195 H + N L++ R L R L + ++ + S EH +V+A+ GD E+ Sbjct: 134 HDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAIISGDAEKT 193 Query: 196 EQLMQDHL 203 L+++H+ Sbjct: 194 VDLLREHI 201 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 15/203 (7%) Query: 10 SSQIAVRITEAILAKQLAPGTRLGEQQLADLFGVSRTQVREALTRLMARGIVTVSARRGW 69 S + +I AI+ ++APG+++ E +LA +G+SR +REA+ RL + ++ G Sbjct: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 Query: 70 FVIEPTAEQAREAFEARRVIELGLLRQARVRPISAQAIGQLR---DHIAREEAAIAGADV 126 V+ T E E F+ R +E R A R +S + +LR D ++EA AG Sbjct: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQR-MSRAELDELRRVLDTHEKDEAFQAG--- 133 Query: 127 GARSYLL----GDFHVCLCECLGNSLLSETL-RDLTARTTLTAMLHQSS-EQAEDSCSEH 180 R Y DFH + + GN +L+ L +L + + + ++ + + +EH Sbjct: 134 --RGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEH 191 Query: 181 VLIVEALERGDLERAEQLMQDHL 203 I++AL GD E A+ LM+ H+ Sbjct: 192 HRILDALADGDGELADLLMRRHI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 615,807 Number of extensions: 20639 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 14 Length of query: 248 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 165 Effective length of database: 1,226,865 Effective search space: 202432725 Effective search space used: 202432725 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)