BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0089.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313539|ref|YP_003777631.1| adenosine deaminase [Herbaspiri...   669   0.0  

>gi|300313539|ref|YP_003777631.1| adenosine deaminase
           [Herbaspirillum seropedicae SmR1]
          Length = 352

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/352 (95%), Positives = 345/352 (98%)

Query: 1   MSSAVISSSATGAALDGFIAGLPKTELHLHIEGTLEPELMFALAQRNNVALPYASVEDLR 60
           M++AV  SSA+GAALD FIAG+PKTELHLHIEGTLEPELMFALAQRN +ALPYASVE LR
Sbjct: 1   MNTAVTPSSASGAALDAFIAGMPKTELHLHIEGTLEPELMFALAQRNQIALPYASVEALR 60

Query: 61  AAYNFSDLQSFLDLYYAGANVLRTEQDFYDMTAAYIARAQADNVRHAEIFFDPQTHTERG 120
           AAYNFSDLQSFLDLYYAGANVLRTEQDFYDMTAAYIARAQAD VRHAEIFFDPQTHTERG
Sbjct: 61  AAYNFSDLQSFLDLYYAGANVLRTEQDFYDMTAAYIARAQADQVRHAEIFFDPQTHTERG 120

Query: 121 IPIATVFAGIAAALRDARRRDGFGSVMIMSFLRHLSEEDAFATLEAALPLREQYADLWLG 180
           IPIATVFAGIAAALRDARRRDGFGSVMIMSFLRHLSEEDAFATLEAALPLREQYADLWLG
Sbjct: 121 IPIATVFAGIAAALRDARRRDGFGSVMIMSFLRHLSEEDAFATLEAALPLREQYADLWLG 180

Query: 181 IGLDSSERGNPPEKFERVYARCRELGFRLVAHAGEEGPAAYVIGALDVLHVERIDHGVRS 240
           IGLDSSERGNPPEKFERVYARCRELGFRLVAHAGEEGPAAYVIGALD LHVERIDHGVRS
Sbjct: 181 IGLDSSERGNPPEKFERVYARCRELGFRLVAHAGEEGPAAYVIGALDTLHVERIDHGVRS 240

Query: 241 EEDPALMQRLAQQRTPLTVCPLSNLKLCVVKDMAEHNLARLLDAGLAVTVNSDDPAYFGG 300
           EEDPALMQRLAQQRTPLTVCPLSNLKLCVVKDMAEHNLARLLDAGLAVTVNSDDPAYFGG
Sbjct: 241 EEDPALMQRLAQQRTPLTVCPLSNLKLCVVKDMAEHNLARLLDAGLAVTVNSDDPAYFGG 300

Query: 301 YMNANYHAVARSLNLSREQVLQLARNGIDACFLSDEDKATLHQELEQYAASH 352
           YMNANYHAVAR+L+LSREQVLQLARNGIDACFL+DEDKATLHQELEQYAA+H
Sbjct: 301 YMNANYHAVARALDLSREQVLQLARNGIDACFLADEDKATLHQELEQYAAAH 352


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,057,715
Number of extensions: 43306
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)