BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0085.p
         (483 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313541|ref|YP_003777633.1| cytosine/purine/uracil/thiamine...   921   0.0  

>gi|300313541|ref|YP_003777633.1|
           cytosine/purine/uracil/thiamine/allantoin permease
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 481

 Score =  921 bits (2381), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/482 (96%), Positives = 478/482 (99%), Gaps = 2/482 (0%)

Query: 1   MTTDASPSAAPGAYIAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS 60
           MTTD+SP+A+  +Y+AGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS
Sbjct: 1   MTTDSSPAAS--SYLAGADDARLTNEDLAPLKKQTWGSYNIFAFWMSDVHSVGGYVFAGS 58

Query: 61  LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR 120
           LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR
Sbjct: 59  LFALGLTSWQVLISLLIGISIVYLLCNLVARPSQAHGVPYPVMSRLSFGVLGANVPAMIR 118

Query: 121 GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSTLGWGGFLLLWVLQA 180
           GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLS LGWGGFLLLWVLQA
Sbjct: 119 GLIAVAWYGIQTYLASAAFVVVVLKFFPELKPYADVHVHSFAGLSALGWGGFLLLWVLQA 178

Query: 181 LVFWNGMDTIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI 240
           LVFWNGM+TIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI
Sbjct: 179 LVFWNGMETIKKFIDFAGPAVYVVMFILAGWMIYKAGWQNVGLNLGEIKYSGWAAVSVMI 238

Query: 241 TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF 300
           TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF
Sbjct: 239 TAISLVVSYFSGPMLNFGDFSRYCHTFADVKRGNFWGLPVNFLAFSIVTVVTTSATIAVF 298

Query: 301 GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG 360
           GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG
Sbjct: 299 GELITDPVETVSRIDSTTAAVIGALTFLTATIGINIVANFVSAAFDFSNLSPSRISWRAG 358

Query: 361 GMIAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLSDYYLVKQRQVKVEDLYT 420
           GM+AATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILL+DYYL+K+R+VKVEDLYT
Sbjct: 359 GMMAATASIFITPWNLFGNPEVIHYTLDVLGGFIGPLYGILLADYYLIKRREVKVEDLYT 418

Query: 421 MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRKAADFSWFIGAALGAVFYLMFA 480
           MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLR AADFSWFIGAALGA+FYLMFA
Sbjct: 419 MRPEGRYWYTNGVNRDAVKALVLAAAVCVACVMLPQLRAAADFSWFIGAALGALFYLMFA 478

Query: 481 RK 482
           RK
Sbjct: 479 RK 480


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,376,163
Number of extensions: 52851
Number of successful extensions: 238
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 394
Effective length of database: 1,198,455
Effective search space: 472191270
Effective search space used: 472191270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)