BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0082.p
         (412 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313544|ref|YP_003777636.1| transmembrane protein [Herbaspi...   774   0.0  

>gi|300313544|ref|YP_003777636.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 411

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/412 (91%), Positives = 397/412 (96%), Gaps = 1/412 (0%)

Query: 1   MEAYLLDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPTDPELKEKGVGGELWAVHG 60
           MEAY+LDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPTDPELKEKGVGGELWAVHG
Sbjct: 1   MEAYILDWLNLLLRWLHVITAIAWIGSSFYFVWLDNSLVAPTDPELKEKGVGGELWAVHG 60

Query: 61  GGFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSA 120
           GGFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSA
Sbjct: 61  GGFYNPQKYLLAPKVLPEHLHWFYWESYSTWLSGFALFSLLYLFNANVFLVDRNVFDMSA 120

Query: 121 SMAGGTAIAFLVFNWLIYDAICSTIGDRPGADRLVNILVGLQVIVSVWAACHLFSGRAAF 180
           SMAGG AIAFL+FNWLIYDAICSTIGDRPGADRLVN+LVGLQV+VSVWAACHLFSGRAAF
Sbjct: 121 SMAGGAAIAFLIFNWLIYDAICSTIGDRPGADRLVNLLVGLQVVVSVWAACHLFSGRAAF 180

Query: 181 LISGASLATIMSANVLVWIIPGQRKMVASMRAGQAPDPIHGKRGKQRSVHNTYFTLPVLF 240
           LISGASLATIMSANVLVWIIPGQRKMVASMRAGQAPDPIHGKRGKQRSVHNTYFTLPVLF
Sbjct: 181 LISGASLATIMSANVLVWIIPGQRKMVASMRAGQAPDPIHGKRGKQRSVHNTYFTLPVLF 240

Query: 241 AMLSNHYSMTYSAPHNWIVLLCIMAAGALIRQFFVLRHKGVYNWWYPGVAVALLLAVILW 300
           AMLSNHYSMTY+APHNW+VLL IMAAGALIRQFFVLRHKGVYNWWYPG+AV LLLAVI+W
Sbjct: 241 AMLSNHYSMTYNAPHNWVVLLVIMAAGALIRQFFVLRHKGVYNWWYPGIAVGLLLAVIVW 300

Query: 301 MSPAMQSKPVAAVAPSSSAAPAGEAVAAGSFAQVQQVIQARCIQCHAAKPTLMPVPGKGV 360
           MSP MQ++PV  VA SSS++ +  +   G+FAQVQQVIQARCIQCHAA+PTLMPVPGKGV
Sbjct: 301 MSPLMQARPV-VVAASSSSSSSSSSSEGGAFAQVQQVIQARCIQCHAAQPTLMPVPGKGV 359

Query: 361 LLDSPEHISQHAQQIYQQAVVQKAMPLGNMTQITDDERAIIGKWFESGAPVK 412
           LLDSPEHISQHAQQIYQQAVVQKAMPLGNMT IT++ERA+IGKWFE+GA VK
Sbjct: 360 LLDSPEHISQHAQQIYQQAVVQKAMPLGNMTHITEEERAVIGKWFEAGAAVK 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,274,981
Number of extensions: 50722
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 184
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 324
Effective length of database: 1,203,190
Effective search space: 389833560
Effective search space used: 389833560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)