BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0080.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate A...   645   0.0  

>gi|300313546|ref|YP_003777638.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 373

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/334 (94%), Positives = 327/334 (97%), Gaps = 3/334 (0%)

Query: 13  VLGLVMAASSSLALAQETKVKFQLDWRFEGPAALFLVAKSKGYFAQEKLDVTIDAGNGSG 72
           +LGLV A+S+    AQ+T++KFQLDWRFEGPAALFLVAKSKGYFAQEKLDVTIDAGNGSG
Sbjct: 43  LLGLVSASST---FAQDTRIKFQLDWRFEGPAALFLVAKSKGYFAQEKLDVTIDAGNGSG 99

Query: 73  NAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVMMVYNDTPAAVFSLKKSGIKKP 132
           NAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVMMVYNDTPAAVFSLKKSGIKKP
Sbjct: 100 NAVNRVASGTYDMGFADMAALMEFTANNPDAPGKPVAVMMVYNDTPAAVFSLKKSGIKKP 159

Query: 133 ADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSMDPPLRETMLARGDVDAITGFY 192
           ADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSMDPPLRETMLARGDVDAITGFY
Sbjct: 160 ADLAGKKLGAPVFDAGRRAYPIFAKANGLDASKAQWTSMDPPLRETMLARGDVDAITGFY 219

Query: 193 FTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASETMVKQKPEAIKGFLRAFAKASR 252
           FTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIAS+TMVK KPEAIKGFLRAFAKASR
Sbjct: 220 FTSLLNLNARGIKDEDINVMMYPDYGVRLYGNTIIASDTMVKNKPEAIKGFLRAFAKASR 279

Query: 253 DVMANPEAAIKVLKERDGLIDEKLELRRLKLAIASAIATPHAKAEGYGQVYSPRLTLMAS 312
           DVMA+PEAAIKVLKERDGLIDEKLELRRLKLAIASAIATPHAK+EGYGQVY PRLTLMAS
Sbjct: 280 DVMAHPEAAIKVLKERDGLIDEKLELRRLKLAIASAIATPHAKSEGYGQVYGPRLTLMAS 339

Query: 313 QVSDAYGTKTRVNADKIWNGSFLPSKAELDVFPK 346
           QVSDAYGTKTRVNADKIWNGSFLP+KAELDVFPK
Sbjct: 340 QVSDAYGTKTRVNADKIWNGSFLPTKAELDVFPK 373


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,044,859
Number of extensions: 43474
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)