BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0068.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313556|ref|YP_003777648.1| septum site-determining protein...   542   e-155

>gi|300313556|ref|YP_003777648.1| septum site-determining protein
           [Herbaspirillum seropedicae SmR1]
          Length = 271

 Score =  542 bits (1397), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/271 (97%), Positives = 270/271 (99%)

Query: 1   VAKIIVVTSGKGGVGKTTSSASFASGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDL 60
           +AKIIVVTSGKGGVGKTTSSASFASGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDL
Sbjct: 1   MAKIIVVTSGKGGVGKTTSSASFASGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDL 60

Query: 61  INVINKEATLNQALIKDKHCDNLFILPASQTRDKDALTEEGVERVLNDLSKMDFEYIICD 120
           INVINKEATLNQALIKDKHCDNLFILPASQTRDKDALTEEGVERVLNDLSKMDF+YIICD
Sbjct: 61  INVINKEATLNQALIKDKHCDNLFILPASQTRDKDALTEEGVERVLNDLSKMDFDYIICD 120

Query: 121 SPAGIEHGAVMALTFADEAVVVSNPEVSSVRDSDRILGIIQAKSRRASSGGEPVKEHLLI 180
           SPAGIEHGAVMALTFADEAVVV+NPEVSSVRDSDRILGIIQAKSRRAS+GGEPVKEHLLI
Sbjct: 121 SPAGIEHGAVMALTFADEAVVVTNPEVSSVRDSDRILGIIQAKSRRASAGGEPVKEHLLI 180

Query: 181 TRYSPKRVEDGEMLSYTDVQEILRIPLIGIIPESETVLQASNQGSPAIHMKDSDVAQAYQ 240
           TRYSPKRVEDGEMLSYTDVQEILRIPLIGIIPESE+VLQASNQGSPAIH+KD+DVAQAYQ
Sbjct: 181 TRYSPKRVEDGEMLSYTDVQEILRIPLIGIIPESESVLQASNQGSPAIHLKDTDVAQAYQ 240

Query: 241 DVVSRFLGETVELRFTTYEKPGFLQRIFGGK 271
           DVVSRFLGETVELRFTTYEKPG LQRIFGGK
Sbjct: 241 DVVSRFLGETVELRFTTYEKPGLLQRIFGGK 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,286
Number of extensions: 28692
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)