BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0064.p
         (430 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313559|ref|YP_003777651.1| glutamyl-tRNA reductase [Herbas...   852   0.0  

>gi|300313559|ref|YP_003777651.1| glutamyl-tRNA reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 430

 Score =  852 bits (2202), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/430 (97%), Positives = 427/430 (99%)

Query: 1   MHLLAVGLNHTTAPVSLREKVAFPADQIGQAVASARAWFGGNDKIVASGEAAILSTCNRT 60
           MHLLAVGLNHTTAPVSLREKVAFPADQIGQAVASARAWFGG+DKIVASGEAAILSTCNRT
Sbjct: 1   MHLLAVGLNHTTAPVSLREKVAFPADQIGQAVASARAWFGGHDKIVASGEAAILSTCNRT 60

Query: 61  ELYAAAAAGQDGVEFAIDRTAQFLAEYHHIPYADLRPYLYSLPQDNAVRHAFRVASGLDS 120
           ELYAAAAAG+DGVEFAIDRTAQFLA+YHHIPYADLRPYLYSLPQDNAVRHAFRVASGLDS
Sbjct: 61  ELYAAAAAGKDGVEFAIDRTAQFLADYHHIPYADLRPYLYSLPQDNAVRHAFRVASGLDS 120

Query: 121 MVLGEPQILGQMKDAVRQADAAGGLGTYLHQLFQRTFAVAKEVRSTTEIGAHSVSMAAAA 180
           MVLGEPQILGQMKDAVRQADAAGGLGTYLHQLFQRTFAVAKEVRSTTEIGAHSVSMAAAA
Sbjct: 121 MVLGEPQILGQMKDAVRQADAAGGLGTYLHQLFQRTFAVAKEVRSTTEIGAHSVSMAAAA 180

Query: 181 VRLSQRIFDSISGQNVLFIGAGEMIELCATHFAAQNPKTLTVANRTMERGETLAHRFSGR 240
           VRLSQRIFDSISGQNVLFIGAGEMIELCATHFAAQNPKTLTVANRTMERGETLAHRF+G+
Sbjct: 181 VRLSQRIFDSISGQNVLFIGAGEMIELCATHFAAQNPKTLTVANRTMERGETLAHRFNGK 240

Query: 241 AIRLADLPAQLANFDIVVSCTASQLPIIGLGLVERAVKARRHKPIFMVDLAVPRDIEAEV 300
           AIRLADLPAQLA FDIVVSCTAS LPIIGLGLVERAVKARRHKPIFMVDLAVPRDIEAEV
Sbjct: 241 AIRLADLPAQLAQFDIVVSCTASSLPIIGLGLVERAVKARRHKPIFMVDLAVPRDIEAEV 300

Query: 301 GRLDDVFLYTVDDLASVVQSGVENRQAAVAQAEAIIETRVQSFMHWIDSRAMVPLIQDLH 360
           GRLDDVFLYTVDDLASVVQ+GVENRQAAVAQAEAIIETRVQSFMHWIDSRAMVPLIQDL+
Sbjct: 301 GRLDDVFLYTVDDLASVVQTGVENRQAAVAQAEAIIETRVQSFMHWIDSRAMVPLIQDLN 360

Query: 361 ETGEALRLAELERARRMLAKGEDVEAVLDALSKGLTAKFLHGPQQALHHAQGEQRSQLVS 420
           ETGEALRLAELERARRMLAKGEDVEAVLDALS+GLTAKFLHGPQQALHHAQGEQRSQL +
Sbjct: 361 ETGEALRLAELERARRMLAKGEDVEAVLDALSRGLTAKFLHGPQQALHHAQGEQRSQLAA 420

Query: 421 LLPQLFRAKR 430
           LLPQLFRAKR
Sbjct: 421 LLPQLFRAKR 430


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,197,835
Number of extensions: 47198
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,203,190
Effective search space: 411490980
Effective search space used: 411490980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)