BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0060.p (663 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido... 1268 0.0 gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido... 699 0.0 >gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1199 Score = 1268 bits (3281), Expect = 0.0, Method: Compositional matrix adjust. Identities = 615/664 (92%), Positives = 637/664 (95%), Gaps = 1/664 (0%) Query: 1 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY 60 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY Sbjct: 536 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY 595 Query: 61 PAGTQWAEGVTIRHRSELDAVQRELREQRGVSAMIYDQTCASEKRRRRKRNAYPDPAKRA 120 P GTQWAEGVTIRHRSELDAVQRELREQ GVSAMIYDQTCASEKRRRRKRNAYPDPAKRA Sbjct: 596 PVGTQWAEGVTIRHRSELDAVQRELREQPGVSAMIYDQTCASEKRRRRKRNAYPDPAKRA 655 Query: 121 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 180 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG Sbjct: 656 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 715 Query: 181 QLKKPVRAKTQSGPALPTLPEPVLPGLAQPYGIVVTGVGGTGVITIGQIIAMAAHVEGRA 240 QLKKP RA+ GPALP+LPEPVLPGLAQPYGI+VTGVGGTGVITIGQIIAMAAHVEGRA Sbjct: 716 QLKKPARAQADVGPALPSLPEPVLPGLAQPYGILVTGVGGTGVITIGQIIAMAAHVEGRA 775 Query: 241 CSVLDMSGLAQKGGPVMSHVRVAEDPAHIQSTRVGTGMADLVIGCDVIVTAGRDALSRMG 300 CSVLDMSGLAQKGGPVMSHVRVAED AHI STRVGTGMADLVIGCDVIVTA RDALSRMG Sbjct: 776 CSVLDMSGLAQKGGPVMSHVRVAEDAAHIHSTRVGTGMADLVIGCDVIVTASRDALSRMG 835 Query: 301 EGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIAKACGRDNLSLIDAGRIATALMGDA 360 EGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIA+ACGRDNLSL+DAGRIATALMGDA Sbjct: 836 EGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIARACGRDNLSLVDAGRIATALMGDA 895 Query: 361 IATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRVAAHDVDFVLAAAG 420 IATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGR AAHDV FVLAAAG Sbjct: 896 IATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRAAAHDVAFVLAAAG 955 Query: 421 RNGMTAQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDAVEEVRARESTLGEAGRG 480 RNGM+AQVIEFKRTPTLDELVERRVAFLTDY NAAYARSYRD VE+VRARES LGEAGRG Sbjct: 956 RNGMSAQVIEFKRTPTLDELVERRVAFLTDYLNAAYARSYRDFVEQVRARESALGEAGRG 1015 Query: 481 LKLSRAVATYLFKLMAYKDEYEVARLYTEPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDE 540 LKLSRAVA+YLFKLMAYKDEYEVARL+ +PAFRAKIAGMFEGDYKLRFHLAPPLLAKRD+ Sbjct: 1016 LKLSRAVASYLFKLMAYKDEYEVARLHADPAFRAKIAGMFEGDYKLRFHLAPPLLAKRDD 1075 Query: 541 MGHLRKQAFGSWMMPAFGVLAKLRFLRGTAFDPFGYTEERKQERALISEYRATLSRLLAK 600 GHLRKQAFGSWMMP FGVLA+LRFLRGTA DPF YTEER+QERALI+EYRATLSRLL + Sbjct: 1076 KGHLRKQAFGSWMMPVFGVLARLRFLRGTALDPFAYTEERRQERALITEYRATLSRLLDR 1135 Query: 601 LTAENLEQVVAVARIPEEIRGYGHVKERHLQAAMQKQAALLAQLEQGSSQ-QPHSPQGGG 659 LT ENLEQ+ AVARIPEEIRGYGHVKERHL+AAM+KQAALLAQL Q ++Q QP SP GGG Sbjct: 1136 LTPENLEQITAVARIPEEIRGYGHVKERHLKAAMEKQAALLAQLGQAAAQTQPQSPPGGG 1195 Query: 660 KRAA 663 ++AA Sbjct: 1196 QQAA 1199 >gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxidoreductase subunit alpha/beta [Herbaspirillum seropedicae SmR1] Length = 1180 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/648 (54%), Positives = 460/648 (70%), Gaps = 11/648 (1%) Query: 1 VRASVAAKVNITYKILYNDAVAMTGGQEFDGPLDPAMISRQLAAENVRPIIVVTDEPDKY 60 +RA+VAAKVN+TYKILYNDAVAMTGGQ DG + MI++Q+AAE V+ I +V+++P +Y Sbjct: 532 IRAAVAAKVNMTYKILYNDAVAMTGGQPVDGTVSVPMIAQQMAAEGVQRIALVSEDPGRY 591 Query: 61 PAGTQWAEGVTIRHRSELDAVQRELREQRGVSAMIYDQTCASEKRRRRKRNAYPDPAKRA 120 + VT+ R ++DAVQRELRE GV+ +IYDQTCA+EKRRRRK+ YPDP +R Sbjct: 592 ADRSSLPAAVTVHDRKDMDAVQRELRELPGVTVIIYDQTCAAEKRRRRKKGDYPDPNQRL 651 Query: 121 VINEAVCEGCGDCSVQSNCLSVEPLETEFGRKRQINQSSCNKDYSCVNGFCPSFVTVEGG 180 IN AVCEGCGDC VQSNC S+ PLET+ GRKR I+QSSCNKDYSCV GFCPSFVTV GG Sbjct: 652 FINAAVCEGCGDCGVQSNCTSILPLETDLGRKRVIDQSSCNKDYSCVKGFCPSFVTVTGG 711 Query: 181 QLKKPVR--AKTQSGPALPTLPEPVLPGLAQPYGIVVTGVGGTGVITIGQIIAMAAHVEG 238 +L+K ++ + LP+PVLP P+ I++ G+GGTGVITIG ++ MAAH+EG Sbjct: 712 KLRKSRTGVSRQEERDDFGLLPQPVLPACDTPFNILINGIGGTGVITIGALMGMAAHLEG 771 Query: 239 RACSVLDMSGLAQKGGPVMSHVRVAEDPAHIQSTRVGTGMADLVIGCDVIVTAGRDALSR 298 + SVLDM+G++QK G V SHVR+A I++ R+ TG ADLV+GCD++ DA+S+ Sbjct: 772 KGASVLDMTGMSQKNGSVTSHVRIAARRDAIRAQRIATGEADLVLGCDMLTAGAFDAISK 831 Query: 299 MGEGRTHAAVNSTQMPTAAFVRNPDWQFPTASSEGEIAKACGRDNLSLIDAGRIATALMG 358 M GRT A VN Q P F RNPDW+FP + I ++ G+ IDA R+ATALMG Sbjct: 832 MRPGRTRAVVNLHQQPPGQFARNPDWEFPVEEVKALIVESVGQ-QADFIDATRLATALMG 890 Query: 359 DAIATNMFMLGYAWQKGWVPLSEAALLRAIELNALQVEFNKQAFAWGRVAAHDVDFVLAA 418 D+IATN+FMLGYAWQ+G +PL+EA+LLRAIELN + V+ NK AFAWGR AA D LA Sbjct: 891 DSIATNLFMLGYAWQRGELPLTEASLLRAIELNGVAVQANKTAFAWGRRAAVD----LAR 946 Query: 419 AGRNGMTAQVIEFKRTPTLDELVERRVAFLTDYQNAAYARSYRDAVEEVRARESTLGEAG 478 + + AQ + +LD+L++RRV+ LTDYQ+AAYA + + VE VRA E+ LG Sbjct: 947 VEQIAVPAQPVLLHLPQSLDQLIKRRVSLLTDYQDAAYAAQFLEVVEAVRAAEAALGSD- 1005 Query: 479 RGLKLSRAVATYLFKLMAYKDEYEVARLYTEPAFRAKIAGMFEGDYKLRFHLAPPLLAKR 538 KL+ AVA L +LMAYKDEYEVARLYT F+ ++A FEGD+ L FHLAPPLLA++ Sbjct: 1006 ---KLATAVARNLSRLMAYKDEYEVARLYTNGQFQKELAQQFEGDFSLSFHLAPPLLARK 1062 Query: 539 DEMGHLRKQAFGSWMMPAFGVLAKLRFLRGTAFDPFGYTEERKQERALISEYRATLSRLL 598 D GHL K +G W+M AF +LA+++ LRG D FG+TEER+ ER LI +YR + LL Sbjct: 1063 DGQGHLLKARYGGWVMQAFKLLARMKGLRGGLLDLFGHTEERRMERELIVQYRQLVLDLL 1122 Query: 599 AKLTAENLEQVVAVARIPEEIRGYGHVKERHLQAAMQKQAALLAQLEQ 646 +LTA NL + +A++PE++RGYGHVK + + A +Q LLA Q Sbjct: 1123 PRLTAANLATAIELAQLPEQVRGYGHVKLKAVHAMRTRQQQLLAVFAQ 1170 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,918,888 Number of extensions: 77907 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 246 Number of HSP's successfully gapped: 2 Length of query: 663 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 572 Effective length of database: 1,188,985 Effective search space: 680099420 Effective search space used: 680099420 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)