BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0059.p
         (486 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin oxido...   726   0.0  
gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin oxido...   494   e-141

>gi|300313563|ref|YP_003777655.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1199

 Score =  726 bits (1874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/374 (96%), Positives = 369/374 (98%), Gaps = 1/374 (0%)

Query: 1   MNAPLPAGQRLLLDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFIT 60
           MNAPLPAGQRLLLDDVSLDDK+ LERGRVFMTGIQAL+RLPMLQRQYD+RAGLNTAGFIT
Sbjct: 1   MNAPLPAGQRLLLDDVSLDDKYTLERGRVFMTGIQALVRLPMLQRQYDQRAGLNTAGFIT 60

Query: 61  GYRGSPLGSVDQTAEKARKYLEAKQVKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120
           GYRGSPLG+VDQTAEKARKYLEAKQ+KFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS
Sbjct: 61  GYRGSPLGAVDQTAEKARKYLEAKQIKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFS 120

Query: 121 LWYGKGPGVDRCGDVFKHANMAGTSKHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180
           LWYGKGPGVDRCGDVFKHANMAGTS+HGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV
Sbjct: 121 LWYGKGPGVDRCGDVFKHANMAGTSRHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPV 180

Query: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIELP-DFELP 239
           LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERV+I+LP DFELP
Sbjct: 181 LYPSSVQEYLDYGLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVQIQLPADFELP 240

Query: 240 PDGLNIRMPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 299
           PDGLNIR PDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT
Sbjct: 241 PDGLNIRQPDTVLGQEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDT 300

Query: 300 RQALEDLGIDEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 359
           RQALEDLGIDEQ A DIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK
Sbjct: 301 RQALEDLGIDEQAARDIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLK 360

Query: 360 EELYNWRDDVRPRV 373
           EELYNWRDDVRPRV
Sbjct: 361 EELYNWRDDVRPRV 374


>gi|300311866|ref|YP_003775958.1| indolepyruvate ferredoxin
           oxidoreductase subunit alpha/beta [Herbaspirillum
           seropedicae SmR1]
          Length = 1180

 Score =  494 bits (1272), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/367 (65%), Positives = 288/367 (78%), Gaps = 6/367 (1%)

Query: 13  LDDVSLDDKFALERGRVFMTGIQALIRLPMLQRQYDERAGLNTAGFITGYRGSPLGSVDQ 72
           L  VSLDDK+    G ++++GIQAL+RLP+LQ+  D  AGLNTAGFI+GYRGSPLG +D+
Sbjct: 14  LAPVSLDDKYTATTGAIYLSGIQALVRLPLLQQIRDRAAGLNTAGFISGYRGSPLGGLDE 73

Query: 73  TAEKARKYLEAKQVKFHPGMNEDLAATSVWGTQQVNLFKGAQYDGVFSLWYGKGPGVDRC 132
               A+ +L A +VKF PG+NED+AAT+VWGTQQV L   + YDGV+++WYGKGPGVDRC
Sbjct: 74  ALWHAQPHLAAHRVKFQPGVNEDMAATAVWGTQQVKLIGPSDYDGVYAMWYGKGPGVDRC 133

Query: 133 GDVFKHANMAGTSKHGGVLVIAGDDHAAKSSTAAHQSEHILKACGIPVLYPSSVQEYLDY 192
           GDV KH N AGTS HGGVL++AGDDH A SST  HQS+HI  A  IP+LYP +VQEYLD 
Sbjct: 134 GDVLKHMNHAGTSAHGGVLLVAGDDHGAYSSTLPHQSDHIFSASMIPMLYPCNVQEYLDL 193

Query: 193 GLHGWAMSRYTGLWVAMKCVTDLVESGMSVMIDPERVKIELP-DFELPPDGLNIRMPDTV 251
           GLHGWAMSRY+G  V  K + D VES  SV  DP RV+I LP DF +P  GLN R+    
Sbjct: 194 GLHGWAMSRYSGCVVGFKALADTVESSASVDADPFRVQIRLPSDFVMPEGGLNARLSTDT 253

Query: 252 LG-----QEARMINYKWYAALAYARANKLNRIIWDSPRARIGIITAGKSYLDTRQALEDL 306
           LG     QEA M +YK YAALAYARAN+LNR++ DSP+AR+GII +GKSYLD  +AL +L
Sbjct: 254 LGVQARKQEALMQDYKIYAALAYARANRLNRVMIDSPKARLGIIASGKSYLDVLEALSEL 313

Query: 307 GIDEQVAADIGIRLYKVGMTWPLEAEGVREFAQGLDEILVVEEKRQILEYQLKEELYNWR 366
           GIDE  AA+IG+RL+KV M WPLE +GVREFAQGLDEILVVEEKRQ++EYQLKE+LYNWR
Sbjct: 314 GIDEAFAAEIGLRLFKVSMPWPLEPDGVREFAQGLDEILVVEEKRQMVEYQLKEQLYNWR 373

Query: 367 DDVRPRV 373
           DDVRPRV
Sbjct: 374 DDVRPRV 380


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,702,637
Number of extensions: 77352
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 2
Length of query: 486
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 397
Effective length of database: 1,198,455
Effective search space: 475786635
Effective search space used: 475786635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)