BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0057.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313566|ref|YP_003777658.1| histone acetyltransferase HPA2 ...   460   e-131

>gi|300313566|ref|YP_003777658.1| histone acetyltransferase HPA2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  460 bits (1183), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/245 (91%), Positives = 236/245 (96%), Gaps = 4/245 (1%)

Query: 1   MSHPLSRLLQRLRGQQPGLPPAQPEKQDKPNVFVKELSPRARRHLLRHFLALEEKDRLLR 60
           MS+PL+RLL+RLRG +      Q E+Q+KP+VFVKELSPR+RRHLLRHFLALEEKDRLLR
Sbjct: 1   MSNPLARLLKRLRGSKT----EQDERQEKPHVFVKELSPRSRRHLLRHFLALEEKDRLLR 56

Query: 61  FGSKLSDEMVTRYVEGINFERDTVFGVYDRRLRLLGVGHLAFAPKESTRISGATIKPVVA 120
           FGSKLSD+MVTRYVEGINFERDTVFGVYDRRLRLLGVGHLAFAPKE+TRISGATIKPVVA
Sbjct: 57  FGSKLSDDMVTRYVEGINFERDTVFGVYDRRLRLLGVGHLAFAPKEATRISGATIKPVVA 116

Query: 121 EFGVSVTAAARGLGVGTRLFMRASMHCRNADVDTLYMHCLSSNKVMMHIAKKAGMEIHRD 180
           EFGVSV+AAARGLGVGTRLFMRA+MHCRNADVDTLYMHCLSSNKVMMHIAKKAGMEIHRD
Sbjct: 117 EFGVSVSAAARGLGVGTRLFMRAAMHCRNADVDTLYMHCLSSNKVMMHIAKKAGMEIHRD 176

Query: 181 YGEADAYLKIKPANSATVFQEALEEQVAMLDYIVKANFKALLKWGARVTGIGAKKKDDGT 240
           YGEADAYLKIKPANSATVFQEALEEQVAMLDYIVKANFKALLKWGARVTGIGA+KKDDG 
Sbjct: 177 YGEADAYLKIKPANSATVFQEALEEQVAMLDYIVKANFKALLKWGARVTGIGARKKDDGA 236

Query: 241 PPPAA 245
           PPPAA
Sbjct: 237 PPPAA 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 635,033
Number of extensions: 22848
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)