BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0056.p
         (410 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [He...   772   0.0  
gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/pol...    80   2e-16

>gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/405 (92%), Positives = 391/405 (96%)

Query: 1   MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRPVGKDFPVFLHPDTHEEYAL 60
           MKTYTVGGAVRDGLLGLPVKDRDHVVVGATP+QLL LGFRPVGKDFPVFLHP T EEYAL
Sbjct: 1   MKTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRPVGKDFPVFLHPHTQEEYAL 60

Query: 61  ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADLEARV 120
           ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRAD+ ARV
Sbjct: 61  ARTERKTAPGYKGFAFHAAPDVTLEDDLARRDLTINAIAQDEDGTLVDPYHGRADIAARV 120

Query: 121 FRHVSEAFVEDPVRILRVARFAARFADFTVAPETNALMQRMVQEGEVDALVPERVWQELA 180
           FRHVS+AF+EDPVRILRVARFAARFADFTVAPETNALMQRMV++GEVDALVPERVWQEL+
Sbjct: 121 FRHVSDAFIEDPVRILRVARFAARFADFTVAPETNALMQRMVEQGEVDALVPERVWQELS 180

Query: 181 RGLMEHKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240
           RGLME KPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ
Sbjct: 181 RGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKWHPEIDTGVHVMLVVDWAAAQ 240

Query: 241 DFSLPIRFAALLHDLGKGTTPPEIWPRHHGHEARSERLAEDVCTRLKVPGECRDLALMTA 300
            F+LPIRFAAL+HDLGKGTTPPE+WPRHHGHEARSERLAE VC RLKVPGECRDLALMTA
Sbjct: 241 GFTLPIRFAALMHDLGKGTTPPEMWPRHHGHEARSERLAEQVCARLKVPGECRDLALMTA 300

Query: 301 REHGNVGRSFEMRPDTLVKFFARCDAFRKPQRFVDMLRASECDHRGRTGLELQPFPQAAY 360
           REHGNVGR+FEMRPDTLVKFF+RCDAFRKPQRF+DMLRA+ECDHRGRTGLE QPFPQAAY
Sbjct: 301 REHGNVGRAFEMRPDTLVKFFSRCDAFRKPQRFIDMLRAAECDHRGRTGLEQQPFPQAAY 360

Query: 361 LEGALQAAQAIDAGAIAQQQAQPQRIPEAILAARTAQVAAYVEQH 405
           LEGALQAAQ IDAGAIAQ Q+QPQRIPEAI AART QVAA+V QH
Sbjct: 361 LEGALQAAQQIDAGAIAQAQSQPQRIPEAIQAARTEQVAAFVAQH 405


>gi|300309964|ref|YP_003774056.1| tRNA
           nucleotidyltransferase/poly(A) polymerase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/213 (34%), Positives = 105/213 (49%), Gaps = 30/213 (14%)

Query: 2   KTYTVGGAVRDGLLGLPVKDRDHVVVGATPQQLLELGFRP--VGKDFPVFLHPDTHEEYA 59
           K + VGGAVRD LLG+  KD D V   ATP+Q+ +L  R   +G+ F +      H  + 
Sbjct: 75  KAFIVGGAVRDLLLGIKPKDFD-VATNATPEQVKQLFRRAFIIGRRFQI-----VHVMFG 128

Query: 60  LARTERKTAPGYKGFAFHAAP---------DVTL---EDDLARRDLTINAIAQDEDGTLV 107
               E  T   ++G +  AAP         D T     +D  RRD TINA+  D     V
Sbjct: 129 QELIEVTT---FRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAV 185

Query: 108 DPYHGR-ADLEARVFRHVSEA---FVEDPVRILRVARFAARFADFTVAPETNALMQRMVQ 163
             YHG  AD+  +  R + E    + EDPVR+LRV RFAA+   FT+ P ++A ++ M  
Sbjct: 186 LDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTIDPASSAPIRVMAP 244

Query: 164 EGEVDALVPERVWQELARGLMEHKPSRMFEVLR 196
              +D +   RV+ E+ + LM        + LR
Sbjct: 245 --LIDNVPAARVFDEMLKLLMSGHALACLQQLR 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,270,769
Number of extensions: 52484
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 410
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,207,925
Effective search space: 390159775
Effective search space used: 390159775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)