BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0053.p
         (609 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313570|ref|YP_003777662.1| soluble lytic murein transglyco...  1152   0.0  

>gi|300313570|ref|YP_003777662.1| soluble lytic murein
           transglycosylase precursor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 666

 Score = 1152 bits (2981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/596 (95%), Positives = 586/596 (98%)

Query: 14  QDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWDGQAIVDRLRNDWLLALG 73
           QDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWDGQAIVDRLRNDWLLALG
Sbjct: 71  QDLASRLSGYELASYVDYYRLKPRVRDYSASEQEIRDFLARWDGQAIVDRLRNDWLLALG 130

Query: 74  KTGNWAVFDEQYPKFVLNDDTQVKCFALNSRALKGANVAEEARALLSNPKDYGQGCSDLI 133
           KTGNWAVFDEQYPKFVLNDDTQVKCFALNSRALKG NVAEEARALL+NPKDYGQGCSDLI
Sbjct: 131 KTGNWAVFDEQYPKFVLNDDTQVKCFALNSRALKGENVAEEARALLTNPKDYGQGCSDLI 190

Query: 134 ATLAQNGQFSDADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMDRPALMLAKGPG 193
           ATLAQNGQFS ADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMDRPALMLAKGPG
Sbjct: 191 ATLAQNGQFSQADVWFQIRQAAENGNATVARRAAVLVDSGDVSVTQVMDRPALMLAKGPG 250

Query: 194 RGPVNHQLYIIALGRIAKTNPSQAATYLNDAGRNMSSQEVALGWAQIALAASYKLAPEAS 253
           +G  NHQLYIIALGRIAK+NP+QAATYLNDAGRN++SQE A  WAQIALAASYKLAPEAS
Sbjct: 251 KGVANHQLYIIALGRIAKSNPAQAATYLNDAGRNLTSQEAAQAWAQIALAASYKLAPEAS 310

Query: 254 DYWRKAKDAPLTQDAMQWKVRMALRDGDWKTVRKTIEAMPAPLRSDTAWVYWLGRALKAE 313
           DYWR+AKD PLTQDAMQWKVRMALRDGDWKTVR+TIEAMPAPLRSDTAWVYWLGRALK +
Sbjct: 311 DYWRRAKDTPLTQDAMQWKVRMALRDGDWKTVRRTIEAMPAPLRSDTAWVYWLGRALKED 370

Query: 314 GQNEAARRLFESIAPNFSFYGQLALEELGQQITIPPGPTPPGAGEVALYSQNAGFKRSLK 373
           GQ++AARRLFESIAPNFSFYGQLALEELGQ+ITIPPGPTPPGAGEVALYSQNAGFKRSLK
Sbjct: 371 GQHDAARRLFESIAPNFSFYGQLALEELGQKITIPPGPTPPGAGEVALYSQNAGFKRSLK 430

Query: 374 FYQLNLRFEAIREWNWELRNMTDRQLLAAAEYARQNDVLDRMVNTSDRTKTEFDFTQRFP 433
           FYQLNLRFEAIREWNWELRNMTDRQLLAAAEYARQNDVLDRMVNTSDRTK+EFDFTQRFP
Sbjct: 431 FYQLNLRFEAIREWNWELRNMTDRQLLAAAEYARQNDVLDRMVNTSDRTKSEFDFTQRFP 490

Query: 434 APHLPEMNAATRPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVAKKIG 493
           APHLPEMNAAT+PLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVA+KIG
Sbjct: 491 APHLPEMNAATKPLGMENAWVYGLIRQESRFIKSARSHVGASGLMQLMPATAKFVARKIG 550

Query: 494 MTEFTADQVNDINTNLLLGTSYLDMVLNNLEGSETLATAGYNAGPGRPRTWRATLPRPVE 553
           M+EFTADQVNDINTNLLLGTSYLDMVLNNLEGSETLATAGYNAGPGRPRTWRATLPR VE
Sbjct: 551 MSEFTADQVNDINTNLLLGTSYLDMVLNNLEGSETLATAGYNAGPGRPRTWRATLPRTVE 610

Query: 554 GAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNANVATDLP 609
           GAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPN+NVATDLP
Sbjct: 611 GAIFAEIIPFNETRGYVKNVMSNATYYAAMFENRPQSLKQRMGTVAPNSNVATDLP 666


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,837,058
Number of extensions: 75392
Number of successful extensions: 232
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 518
Effective length of database: 1,188,985
Effective search space: 615894230
Effective search space used: 615894230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)