BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0043.p (538 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294... 748 0.0 gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily prot... 465 e-132 >gi|300313579|ref|YP_003777671.1| hypothetical protein Hsero_4294 [Herbaspirillum seropedicae SmR1] Length = 532 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/525 (81%), Positives = 453/525 (86%), Gaps = 7/525 (1%) Query: 1 MANREDLAIIRAARAGDAQAQLNLGQRYLFGGNGLPQSPGTAWHWLERAARQGLADAWML 60 MANREDLAIIRAARAG A AQL LG+RYLFGGNGLPQS TA+HWLERAARQ LADAWML Sbjct: 1 MANREDLAIIRAARAGQAAAQLTLGKRYLFGGNGLPQSLSTAFHWLERAARQELADAWML 60 Query: 61 IARHIPYEVVSQLGKPHEAAQWYERAFEAGATRAGLTLARLVLEHPAGVAAASPEQKNRA 120 IA HIPYEVV L +P EAAQWYERAFE G T+AGL ARLVLE AG A E K RA Sbjct: 61 IAEHIPYEVVVTLTRPQEAAQWYERAFEGGMTKAGLAFARLVLE-SAGEPGA--ELKARA 117 Query: 121 LRALETVAAEGDPDAQWLLARQGERMLVPTAVSSEAAADVAPAAAATVRPEQLQQWTQKA 180 +R L+ VA EGDPDAQWLLARQG + A + +AA APA A + PE LQQWTQKA Sbjct: 118 IRVLQVVAREGDPDAQWLLARQGSQ----PAEPAASAAVAAPAPAPDLPPEDLQQWTQKA 173 Query: 181 ADAGIEQAQHALADSAWQQSDFAAFRQRAQPLADALLRQHEQQVAQLNAPSEALAAALGA 240 ADAGIEQAQHALAD+AWQQ+D FRQRAQPLAD LLRQ+E VAQLN P+EALA ALG Sbjct: 174 ADAGIEQAQHALADAAWQQADLIQFRQRAQPLADKLLRQYEALVAQLNGPAEALATALGP 233 Query: 241 QNIQLLRRLAEVHQSDKRPDLLQAQQLLELAALACDRDAQLALGLLYGRVDASGERRFAG 300 QNI LLRRLA+VH +KR DL QAQQLLELAALACDRDAQLALGLLYGRVD G R F G Sbjct: 234 QNIVLLRRLAQVHLGEKRADLQQAQQLLELAALACDRDAQLALGLLYGRVDEQGVRCFPG 293 Query: 301 QGSANYKKAIRWLTLAGEQGMAAAWFVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVGA 360 GSANYKKAIRWLTLAGEQGMAAAW+VLSRIYLKPEFSQRNLADVQHYLERAAEMGHV A Sbjct: 294 LGSANYKKAIRWLTLAGEQGMAAAWYVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVAA 353 Query: 361 QVECGVGAWRNRRDDPANDVRALYWLQKAASQGAQQAQALLDKVADRPQSAAWAVQARAQ 420 Q+ECG+GAWRNRRD+ NDVRALYWLQKAASQG +QAQALLDKVADRPQ+AAWAV ARAQ Sbjct: 354 QLECGIGAWRNRRDEAGNDVRALYWLQKAASQGDEQAQALLDKVADRPQAAAWAVLARAQ 413 Query: 421 MSREQVNAHPFLAARIELAMLFGLTRPEALLIDLKQADCGHCLMIDIRSQYARSKRRLIM 480 ++REQVNAHPFLAARIELA LFGLTRPEALLIDLKQAD GHCLM+DIRSQYARSKRRLIM Sbjct: 414 LTREQVNAHPFLAARIELATLFGLTRPEALLIDLKQADRGHCLMVDIRSQYARSKRRLIM 473 Query: 481 VETGEQRGTLNRIGRLFEDMDCGPSGPEGNYRQRLYRLKTVLPQS 525 VE GEQRG LNRIGRLFED+DCGPSGPEGNYRQRLYRLKTVLPQS Sbjct: 474 VENGEQRGALNRIGRLFEDVDCGPSGPEGNYRQRLYRLKTVLPQS 518 >gi|300309528|ref|YP_003773620.1| TPR repeat, SEL1 subfamily protein [Herbaspirillum seropedicae SmR1] Length = 513 Score = 465 bits (1197), Expect = e-132, Method: Compositional matrix adjust. Identities = 269/524 (51%), Positives = 347/524 (66%), Gaps = 15/524 (2%) Query: 1 MANREDLAIIRAARAGDAQAQLNLGQRYLFGGNGLPQSPGTAWHWLERAARQGLADAWML 60 MA RE+LA+I+AARAG+++AQL LG+RYL GG+GLP+S GTA++WL RAA+QG+ DAWM+ Sbjct: 1 MATREELAVIKAARAGESRAQLALGRRYLNGGSGLPRSKGTAFYWLRRAAQQGVDDAWMI 60 Query: 61 IARHIPYEVVSQLGKPHEAAQWYERAFEAGATRAGLTLARLVLEHPAGVAAASPEQKNRA 120 I R+I YE V +L P EAA WYE+AFEAG +AGL ARLVL++ + + + RA Sbjct: 61 IGRNITYEQVKELSPPREAAVWYEKAFEAGVPQAGLIFARLVLDNTSEFDSNT---HARA 117 Query: 121 LRALETVAAEGDPDAQWLLARQGERMLVPTAVSSEAAADVAPAAAATVRPEQLQQWTQKA 180 + AL +A+ D +AQWLLA+Q +R P + P AAA P + +A Sbjct: 118 IAALSLLASRDDHEAQWLLAQQMQRHGQP----------MLPGAAAA-SPAYEDKLMLEA 166 Query: 181 ADAGIEQAQHALADSAWQQSDFAAFRQRAQPLADALLRQHEQQVAQLNAPSEALAAA-LG 239 A AGIE+AQ+A+ D AWQQ D A+F + AQ + LL +H VAQL + A L Sbjct: 167 ARAGIEEAQYAVLDKAWQQGDEASFARGAQRVTQRLLARHANAVAQLEKDGQIHGAVQLS 226 Query: 240 AQNIQLLRRLAEVHQSDKRPDLLQAQQLLELAALACDRDAQLALGLLYGRVDASGERRFA 299 + LL R + PD + Q L ELAA+ + A L LGLL ++D GER F Sbjct: 227 DEEATLLLRYGQWRLRGASPDPDELQILFELAAMGGNAQACLELGLLCAKIDRQGERIFM 286 Query: 300 GQGSANYKKAIRWLTLAGEQGMAAAWFVLSRIYLKPEFSQRNLADVQHYLERAAEMGHVG 359 G AN+KKA+ WL AGE G+A W L+RIY + +SQRNL QHYLE+AA+ G V Sbjct: 287 EHGLANFKKALHWLERAGEAGVAQGWHALARIYSRSIYSQRNLQVAQHYLEKAAQAGLVE 346 Query: 360 AQVECGVGAWRNRRDDPANDVRALYWLQKAASQGAQQAQALLDKVADRPQSAAWAVQARA 419 AQ E WR+RRDDP NDV+ALYW Q+AA+QG AQA LD A +P + WA+QA+A Sbjct: 347 AQCELAQVCWRHRRDDPLNDVKALYWWQQAAAQGEPTAQAALDAFAAQPDAQGWALQAQA 406 Query: 420 QMSREQVNAHPFLAARIELAMLFGLTRPEALLIDLKQADCGHCLMIDIRSQYARSKRRLI 479 ++ + N+ PFL+ARIELA FGLT+PEALLID+K AD GHCL++DI + +ARSKRRLI Sbjct: 407 LLTDKLRNSSPFLSARIELAATFGLTKPEALLIDIKAADYGHCLVVDICAHHARSKRRLI 466 Query: 480 MVETGEQRGTLNRIGRLFEDMDCGPSGPEGNYRQRLYRLKTVLP 523 V+T QR TLNR+ RLF D+DCG G EGNYRQR YRL+T P Sbjct: 467 AVQTDAQRATLNRVSRLFGDVDCGFDGLEGNYRQRQYRLRTTFP 510 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.130 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,583,096 Number of extensions: 63512 Number of successful extensions: 363 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 337 Number of HSP's successfully gapped: 2 Length of query: 538 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 448 Effective length of database: 1,193,720 Effective search space: 534786560 Effective search space used: 534786560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)