BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0038.p (297 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313582|ref|YP_003777674.1| site-specific integrase/recombi... 407 e-115 gi|300310183|ref|YP_003774275.1| site specific integrase/recombi... 116 3e-27 >gi|300313582|ref|YP_003777674.1| site-specific integrase/recombinase [Herbaspirillum seropedicae SmR1] Length = 330 Score = 407 bits (1047), Expect = e-115, Method: Compositional matrix adjust. Identities = 201/229 (87%), Positives = 211/229 (92%) Query: 1 MPANPVDGVKPPKKSKPLPKALPADEAIRLVSQADPARDPDSTLAACNRAMFELLYSSGL 60 + ANPVDGVK PKKSKPLPKAL AD+AIRLVSQ DP RDPDSTLAACNRAMFELLYSSGL Sbjct: 102 LAANPVDGVKAPKKSKPLPKALAADDAIRLVSQPDPVRDPDSTLAACNRAMFELLYSSGL 161 Query: 61 RVSELAGIDVKDVREGTYESAGWIDLEEAEVTVTGKGGKRRKVPVGQAALQAIRDWLPLR 120 RVSEL GIDV DVREG YESAGW+DLEEAEVTVTGKGGK+RKVPVGQAA A+ DWLPLR Sbjct: 162 RVSELVGIDVADVREGGYESAGWVDLEEAEVTVTGKGGKKRKVPVGQAARAALADWLPLR 221 Query: 121 ASLVKADGGMDGHALFLNERGARMSPRVTQLRLKAHGKSVEMPADVHPHMLRHSFASHVL 180 A L KADGG D HALFLNERGAR+SPRV QLRLKAHG+++EM +DVHPHMLRHSFASHVL Sbjct: 222 ARLRKADGGPDSHALFLNERGARISPRVAQLRLKAHGRALEMASDVHPHMLRHSFASHVL 281 Query: 181 QSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPRARKGGGK 229 QSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPRARK GGK Sbjct: 282 QSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPRARKNGGK 330 >gi|300310183|ref|YP_003774275.1| site specific integrase/recombinase [Herbaspirillum seropedicae SmR1] Length = 307 Score = 116 bits (290), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/223 (35%), Positives = 123/223 (55%), Gaps = 19/223 (8%) Query: 1 MPANPVDGVKPPKKSKPLPKALPADEAIRLVSQADPARDPDSTLAACNRAMFELLYSSGL 60 + A+P ++ ++ + PK L + L++ A D + L +RAM EL+Y+SGL Sbjct: 102 VAADPCLKLRSARQPQRFPKTLSEGQVEALLA----APDVSTPLGLRDRAMIELMYASGL 157 Query: 61 RVSELAGIDVKDVREGTYESAGWIDLEEAEVTVTGKGGKRRKVPVGQAALQAIRDWL-PL 119 RVSEL + +K + G + E + VTGKG K R VP G+ A + +L Sbjct: 158 RVSEL--VLLKSIEVG---------MNEGVLRVTGKGSKTRLVPFGEEAGSWLMRYLAEA 206 Query: 120 RASLVKADGGMDGHALFLNERGARMSPRVTQLRLKAHGKSVEMPADVHPHMLRHSFASHV 179 RA +++ G +D ALF+ RG M+ ++ +K + + A + PH LRH+FA+H+ Sbjct: 207 RAQILQ--GQVDD-ALFVTARGGPMTRQMFWTLIKKYALQAGVTARLSPHTLRHAFATHL 263 Query: 180 LQSSGDLRAVQEMLGHASITATQVYTALDFQRLAQVYDQAHPR 222 L DLR VQ +LGHA I+ TQ+YT + +RL Q++ HPR Sbjct: 264 LNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHAAHHPR 306 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 880,051 Number of extensions: 32944 Number of successful extensions: 96 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 95 Number of HSP's successfully gapped: 2 Length of query: 297 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 212 Effective length of database: 1,217,395 Effective search space: 258087740 Effective search space used: 258087740 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)