BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0035.p
         (216 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300...   301   2e-83
gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465...    63   2e-11

>gi|300313585|ref|YP_003777677.1| hypothetical protein Hsero_4300
           [Herbaspirillum seropedicae SmR1]
          Length = 303

 Score =  301 bits (772), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/216 (68%), Positives = 175/216 (81%)

Query: 1   MQSAVQRYAVYPAGQQLLDQLDPALRERTRTTLQRFGMTPDNVQQLRPWMLAMALTVQEY 60
           MQ A QR+ +YP GQ LLDQL P LR+RT  TLQR G+    VQ LRPWMLA+ALTVQEY
Sbjct: 88  MQEAAQRHGLYPPGQHLLDQLAPPLRQRTMATLQRLGLPEQGVQNLRPWMLALALTVQEY 147

Query: 61  VRHGYRTDLAVDSHLAESVRAHGGRVIELESADRQLGLFSKLTPAQQAHFLSDTLQELDD 120
            RHGY++ LAVDSHLA SVRAHGG+++ELESA+RQ+ LFS+L+ AQQA FL DTL+EL D
Sbjct: 148 ARHGYQSALAVDSHLAASVRAHGGQILELESAERQMRLFSQLSDAQQAQFLDDTLKELQD 207

Query: 121 ADLTRKLDRLVAAWRRADSADFGAALQEMQQDDSLASRFAVQTLLRERNPGLAAGIAGLL 180
           + L R++D LV AWR ADSA   +AL+E+Q+DDS  SRF ++ LLR+RNPGLA GIA LL
Sbjct: 208 SHLNRRIDTLVDAWRHADSAGLASALRELQEDDSFTSRFTLKNLLRDRNPGLATGIAALL 267

Query: 181 RQQDKAVAAIGILHLVGPDSVPVLLEKQGLQVRQLY 216
           R+QDKAVA IGILHL GPDSVP LL KQGLQVRQLY
Sbjct: 268 RRQDKAVAGIGILHLTGPDSVPALLAKQGLQVRQLY 303


>gi|300313747|ref|YP_003777839.1| hypothetical protein Hsero_4465
           [Herbaspirillum seropedicae SmR1]
          Length = 314

 Score = 62.8 bits (151), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 83/207 (40%), Gaps = 14/207 (6%)

Query: 12  PAGQQLLDQLDP---ALRERTRTTLQRFGMTPDNVQQLRPWMLAMALTVQEYVRHGYRTD 68
           P  QQ  D   P   +L  RT   L++    P+N +         +LT+    R G   D
Sbjct: 113 PMPQQAADVSSPLYQSLLARTDQQLRKACADPENFKGASLASKMASLTLLSARRRGLYAD 172

Query: 69  LAVDSHLAESVRAHGGRVIELESADRQLGLFSKLTPAQQAHFLSDTLQELDDADLTRKLD 128
            A+D+ L    R     +IELE    Q  + S+     Q   L   L +++       L 
Sbjct: 173 FAIDAALIGFARYTRKDIIELEQPSDQRRVISQ----TQLASLERNLDDVESGKTEDDLS 228

Query: 129 RLVAAWRRADSADFGAALQEMQQDDSLASRFAVQTLLRERNPGLAAGIAGLLRQQDKAVA 188
            L  AW R D        +++Q           Q    +RN   AAGIA  +     A  
Sbjct: 229 ALALAWERGDMGGIAELCKQLQCQGE-------QQYYEQRNKVFAAGIAKAMAGPGPAFI 281

Query: 189 AIGILHLVGPDSVPVLLEKQGLQVRQL 215
            +G LH++GPDSV   L   G +VRQ+
Sbjct: 282 GVGFLHMLGPDSVIDQLRAMGFEVRQV 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 696,165
Number of extensions: 28753
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 135
Effective length of database: 1,236,335
Effective search space: 166905225
Effective search space used: 166905225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)