BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0034.p
         (315 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313586|ref|YP_003777678.1| acetylglutamate kinase [Herbasp...   573   e-165
gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase [Her...   105   5e-24

>gi|300313586|ref|YP_003777678.1| acetylglutamate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 297

 Score =  573 bits (1478), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 285/288 (98%), Positives = 287/288 (99%)

Query: 1   MTTDLTHVAPQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLV 60
           MTTDLT+VAPQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLV
Sbjct: 1   MTTDLTNVAPQIKAEILAEALPYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLV 60

Query: 61  GMNPVVVHGGGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH 120
           GMNPVVVHGGGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH
Sbjct: 61  GMNPVVVHGGGPQIDAALKKIGKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH 120

Query: 121 YGGQAVGLTGKDGGLIRARKMQMPDKEHPGEFLDIGYVGEIDAINPAVVKALQDDAFIPI 180
           YGGQAVGLTGKDGGLIRARKMQMPDKEHPG FLDIGYVGEI+AINPAVVKALQDDAFIPI
Sbjct: 121 YGGQAVGLTGKDGGLIRARKMQMPDKEHPGAFLDIGYVGEIEAINPAVVKALQDDAFIPI 180

Query: 181 ISPIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDE 240
           ISPIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDE
Sbjct: 181 ISPIGFGDDGQAYNINADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDE 240

Query: 241 MFADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQ 288
           MFADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQ
Sbjct: 241 MFADGTISGGMLPKISSALDAAKSGVNTVHIIDGRIEHSLLLEVLTEQ 288


>gi|300312755|ref|YP_003776847.1| N-acetylglutamate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 451

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 16/271 (5%)

Query: 22  PYIRKFHGKTIVVKYGGNAMTEESLKHGFARDVILLKLVGMNPVVVHGGGPQIDAALKKI 81
           PY+  F GKT VV + G  +T   L+   A+D+ LL  +G+  VVVHG  PQ+   L   
Sbjct: 30  PYVHAFRGKTFVVAFPGELVTAGDLQ-VLAQDLSLLHALGIRVVVVHGSRPQVAEQLALR 88

Query: 82  GKQGTFVQGMRITDEETMEVVEWVLGGEVQQDIVMLINH------YGGQAVGLTGKDGGL 135
             +  F  G+R+ D   +E  +    GE++ DI    +           A+ +    G  
Sbjct: 89  NVEARFHNGLRVADSAALECAKEA-AGELRLDIEAAFSQGLPNTPMAHSAIRVI--SGNF 145

Query: 136 IRARKMQMPDKEHPGEFLDIGYVGEIDAINPAVVKALQDDAFIPIISPIGFGDDGQAYNI 195
           + AR M + D       +D+   G +  I   V++ + +   I ++SP+GF   G+A+N+
Sbjct: 146 VTARPMGVIDG------VDLQLTGVVRKIAADVIQPIMNAGGIVLLSPLGFSPTGEAFNL 199

Query: 196 NADVVAGKIAEILHAEKLIMMTNIAGVQDKAGNLLTDLSAREIDEMFADGTISGGMLPKI 255
             + VA   A  L AEKLI ++    + D  G  + +LS+ + + + + G +S      +
Sbjct: 200 TMEDVAVSAAIALRAEKLIFLSETPMMTDAGGAEIRELSSHQAEAVLSAGFLSPEAAFYL 259

Query: 256 SSALDAAKSGVNTVHIIDGRIEHSLLLEVLT 286
           +S + A  +GV+  HI+    + S LLE+ T
Sbjct: 260 ASVVKACNAGVSRAHIVPFATDGSALLELFT 290


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 987,033
Number of extensions: 44549
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 230
Effective length of database: 1,217,395
Effective search space: 280000850
Effective search space used: 280000850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)