BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0032.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313588|ref|YP_003777680.1| transcription regulation access...   362   e-101

>gi|300313588|ref|YP_003777680.1| transcription regulation accessory
           factor transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/262 (72%), Positives = 213/262 (81%), Gaps = 9/262 (3%)

Query: 1   MRLLVDAGNTRIKWAVVADADRSLAPLPRWQQQGAVERAQVERLARDWGALARQAAPEEE 60
           M LL+DAGNTRIKWAV +D  +      RW+QQGAV R +++ LA+ W AL R   P+  
Sbjct: 1   MMLLIDAGNTRIKWAVPSDHPQREG---RWRQQGAVARGELQSLAQAWAALDR---PQ-- 52

Query: 61  LQICVSNVAGPALRDSLQALLHGVFGPRVIVEWFASTAERAGVRNGYRHPGQLGCDRFAA 120
            +ICVSNVAGPALR+SLQ LL  VFG   ++EWFAST ERAG+RNGYR P +LGCDRFAA
Sbjct: 53  -RICVSNVAGPALRESLQQLLQQVFGSGPVIEWFASTLERAGLRNGYRDPARLGCDRFAA 111

Query: 121 AIGARALFPDQELLVATCGTATTIDVVSADGCFEGGMILPGFGTMATSLALNTAQLPRID 180
           AIGARAL+PD+ELLVATCGTATTIDVVSA G FEGGMILPGFGTMATSLALNTAQLP+ID
Sbjct: 112 AIGARALYPDEELLVATCGTATTIDVVSAQGVFEGGMILPGFGTMATSLALNTAQLPQID 171

Query: 181 GAAPPERLFADNTVEAIVAGCIAAQVGAIEHALAERRRLRPNVPLRCLLAGGAGLLLAPY 240
              P   +FADNTVEAIV+GCIAAQVGAIEHALA R R  P+   RCLLAGGAGL+LAPY
Sbjct: 172 EVTPLAGIFADNTVEAIVSGCIAAQVGAIEHALAARERAHPHTARRCLLAGGAGLVLAPY 231

Query: 241 LASGDTPLEKVDNLVLIGLHMA 262
           L  G+TPLEKVDNLVLIGLH A
Sbjct: 232 LVLGETPLEKVDNLVLIGLHTA 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 849,824
Number of extensions: 35271
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)