BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0029.p
         (383 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313590|ref|YP_003777682.1| transmembrane protein [Herbaspi...   595   e-171

>gi|300313590|ref|YP_003777682.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  595 bits (1534), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/354 (87%), Positives = 329/354 (92%)

Query: 21  ASSFARVSLLVYTLLIVYASWYPFSGWRDMGIKPFDYLGARLPYYWTVFDVWTNVAGYIP 80
            S+FARVSLLVY LLIVYASWYPFSGWRD+GIKPFDYL ARLPYYWT FDVWTNVAGY P
Sbjct: 22  GSAFARVSLLVYALLIVYASWYPFSGWRDLGIKPFDYLWARLPYYWTGFDVWTNVAGYAP 81

Query: 81  LGLLLVLALHPHLRPWWAIWPATLAGVLLSACMEAVQTYLPTRVPSNLDLLTNSLGVALG 140
           LGLLLVLA+HPH+RPWWA+ PATLAGVLLSACMEA QTYLPTRVPSNLDLLTN++GV LG
Sbjct: 82  LGLLLVLAMHPHIRPWWAVLPATLAGVLLSACMEAGQTYLPTRVPSNLDLLTNAVGVTLG 141

Query: 141 AVLGAACSRYFLEDSRFLMLRRRWFSGAASRGLVVAWLWPLALIYPQNHLFGLGHLVPPL 200
           A+LGAACSR FL +SRFL+ R+RWF   ASRGL VA LWPLALIYPQNHLFGLG+LVPPL
Sbjct: 142 ALLGAACSRTFLHESRFLLARQRWFPAEASRGLAVAGLWPLALIYPQNHLFGLGNLVPPL 201

Query: 201 SAFFSDLFDTPIDLATTWLNSAQPSAEQYWLADVIVTACGLTGAALLVLLLMRRQAPRRR 260
           S FFSDL DTPIDLATTWLN+AQ SAEQYWLADVIVTACGLTGAALLVL L+RRQAPRRR
Sbjct: 202 SGFFSDLLDTPIDLATTWLNNAQLSAEQYWLADVIVTACGLTGAALLVLQLLRRQAPRRR 261

Query: 261 LVTLYLLACIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTLMIVGLAWAPPTAQRRVA 320
           LV LYLLACIAAKSLACALFFAPQNAFVWISPSAVGGIMLGT+MI GL+WAPPTAQRRVA
Sbjct: 262 LVALYLLACIAAKSLACALFFAPQNAFVWISPSAVGGIMLGTMMIAGLSWAPPTAQRRVA 321

Query: 321 ALALILSLVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSVLWPFLAIWFL 374
            LAL LSLVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSV+WPFLA+W L
Sbjct: 322 GLALFLSLVVTNAVPANPYYLSTLETWVQGKFLNFDGAAQFLSVIWPFLALWVL 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.139    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,078,921
Number of extensions: 38319
Number of successful extensions: 206
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 205
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 296
Effective length of database: 1,207,925
Effective search space: 357545800
Effective search space used: 357545800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)