BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0026.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypepti...   728   0.0  
gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypepti...    55   9e-09

>gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine
           carboxypeptidase (penicillin-binding) transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/384 (96%), Positives = 376/384 (97%)

Query: 1   MKKLLAAFAATVLSLSALTASAQSLPPPTVAAKSWLLLDASANQVIASSDADTRVEPASL 60
           MKKLLAA AATVLS+S LTASAQSLPPPTVAAKSWLLLDASANQVIASSD DTRVEPASL
Sbjct: 1   MKKLLAALAATVLSISTLTASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPASL 60

Query: 61  TKLMTAYLAFAALRDKRLSLEQEVNVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120
           TKLMTAYLAFAALRDKRLSLEQEV+VSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV
Sbjct: 61  TKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLISV 120

Query: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSADTYTTARDLAILC 180
           SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPS DTYTTARDL+ILC
Sbjct: 121 SGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSILC 180

Query: 181 RNLINDFPDYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240
           RNLINDFP+YYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH
Sbjct: 181 RNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSAH 240

Query: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQAVDTPDVWKGSQ 300
           RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQ VDTPDVWKGSQ
Sbjct: 241 RPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGSQ 300

Query: 301 SKIKVGFKNDVYITIPKGTADKVKTKLERNDPLIAPISENAKVGTLKVTIDDKTVAELPV 360
            KIKVGFKNDVYITIPKGTADKVKTKL+RNDPLIAPI+E AKVGTLKVTIDDKTV ELPV
Sbjct: 301 GKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPIAEGAKVGTLKVTIDDKTVTELPV 360

Query: 361 IALESVGPAGFIGRAWDSLRLMFK 384
           +ALESVGPAGFIGRAWDSLRLMFK
Sbjct: 361 VALESVGPAGFIGRAWDSLRLMFK 384


>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine
           carboxypeptidase [Herbaspirillum seropedicae SmR1]
          Length = 385

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 21/252 (8%)

Query: 30  VAAKSWLLLDASANQVIASSDADTRVEPASLTKLMTAYLAFAALRDKRLSLEQEVNVSVN 89
           + ++   +LD      +   +ADT    AS+TKLMTA +    L  K+L++   + V+ +
Sbjct: 141 IFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVW---LDQKQLAMGNRLEVTED 197

Query: 90  AW-KVDPSSSKMFIEPNKPVSIDNLLYGLISVSGNDAAVAVAEAVSGTEDAFVQLMNREA 148
               +  + S++ +     +S  ++L+  +  S N AA A++    G   AF+  MN  A
Sbjct: 198 DLDTLKFTHSRLGV--GASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARA 255

Query: 149 QRQGLTNTHFSNPHGLPSADTYTTARDLAILCR-----NLI-NDFPDYYKRYYSVKKFTY 202
           Q  G+++THF N  GL S +  +T R+LA L +      LI ND  D  K    +     
Sbjct: 256 QALGMSHTHFENATGL-SPENVSTPRELAALVQAANRYQLIRNDSLDKQK----MINIGR 310

Query: 203 NNITQPNRNRLL-WLDPTVDGMKTGHTSSAGYSLITSAHRPVPNGERRLISVVIGTVSDQ 261
             +   N NRL+ +        KTG  + +G++++    R + +  R +I  ++G+ S  
Sbjct: 311 GQLQYINSNRLIRYGQVNASVQKTGFINESGHNMVL---RMLVHDRRPVIVTMLGSGSAD 367

Query: 262 VRTQESQKLLNW 273
               +  ++  W
Sbjct: 368 GSRLDGVRIAKW 379


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,084,268
Number of extensions: 41360
Number of successful extensions: 129
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)