BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0015.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313603|ref|YP_003777695.1| membrane protein [Herbaspirillu...   614   e-177

>gi|300313603|ref|YP_003777695.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 349

 Score =  614 bits (1584), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 324/352 (92%), Positives = 336/352 (95%), Gaps = 3/352 (0%)

Query: 1   MRTAIQTSSLPPAAAGLALSGAVAWAAMSLGNIGWLQNHGFSALTVAIVLGILIGNTVYP 60
           MRTA QTS L PA AGLALSGA+AWAAMSLGNIGWLQ+HGFSALTVAIVLGI++GNT+YP
Sbjct: 1   MRTATQTSPLHPALAGLALSGALAWAAMSLGNIGWLQDHGFSALTVAIVLGIVLGNTIYP 60

Query: 61  RLGAYCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGVAGVVIDAAMLLSTFGLAWLVG 120
           RLGA CGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVG+AGVVIDAAMLLSTFGLAWLVG
Sbjct: 61  RLGASCGEGVRFSKQTLLRAGIILYGFRLTFQDIAHVGLAGVVIDAAMLLSTFGLAWLVG 120

Query: 121 TKLLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL 180
           TK+LKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL
Sbjct: 121 TKVLKLDRDAALLIGAGSSICGAAAVMATEPVLRARSEQVTVAVSTVVIFGSLAIFLYPL 180

Query: 181 LYTLQAEPVWGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF 240
           L+TLQAEP WGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF
Sbjct: 181 LHTLQAEPAWGLRLPDFGVYIGSTVHEVAQVLAAARSIDQHTADVAVITKMVRVMMLAPF 240

Query: 241 LLMLSMKAAPSAAAASGAAQATKKLSIPWFAFAFIGVVVFNSFFPLPAAVNQLVLQADTL 300
           LLMLSMKAAP+    SG      KLSIPWFAFAFIGVVVFNSFFPLPAA+NQL+LQADTL
Sbjct: 241 LLMLSMKAAPT---TSGHQHQHNKLSIPWFAFAFIGVVVFNSFFPLPAALNQLLLQADTL 297

Query: 301 MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLVIGGALVNGALGRLLA 352
           MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLV+GGALVNGALGRLLA
Sbjct: 298 MLAMAMAALGLSTHLSALRSAGIKPMILGAVLFAWLVVGGALVNGALGRLLA 349


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 843,260
Number of extensions: 29494
Number of successful extensions: 172
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)