BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0010.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase [He...   694   0.0  

>gi|300313612|ref|YP_003777704.1| flavoprotein oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 432

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/399 (86%), Positives = 364/399 (91%), Gaps = 4/399 (1%)

Query: 1   VDVYDAMPSAGRKFLLAGRGGMNITHSEPQPDFLPRYGHRREQVAPFVRRFDADQLRAWI 60
           VDVYDAMPSAGRKFLLAG+GGMNITHSEPQPDFLPRYG RREQVAPFVRRFDAD+LRAWI
Sbjct: 37  VDVYDAMPSAGRKFLLAGKGGMNITHSEPQPDFLPRYGKRREQVAPFVRRFDADRLRAWI 96

Query: 61  HGLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRFHMRHRWLGWQEDGALRFAHP 120
           H LGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVR HMRHRWLGWQ+DG LR AHP
Sbjct: 97  HDLGIETFVGSSGRVFPREMKAAPLLRAWLHRLREAGVRLHMRHRWLGWQQDGTLRLAHP 156

Query: 121 DGHTDVQADAVVLALGGASWPRLGSDGSWVPLLQDRQVEVAPLLPSNCGFELDWSEHFRS 180
           DG T V+ADAVVLALGGASWPRLGSDGSWVPLLQ RQVEVAPLLP+NCGFELDWSEHFR 
Sbjct: 157 DGETSVRADAVVLALGGASWPRLGSDGSWVPLLQARQVEVAPLLPANCGFELDWSEHFRE 216

Query: 181 RFAGEPVKPVVASTALPSGGVQNRRGEFIITADGIEGSLVYAMSSALRDTIAAEGSARLY 240
           RFAG PVKPVVAS ALPSGG+QNRRGEFIITA GIEG LVYA+SSALR+TIA+EGSARLY
Sbjct: 217 RFAGAPVKPVVASVALPSGGMQNRRGEFIITAQGIEGGLVYALSSALRETIASEGSARLY 276

Query: 241 LDLLPDWPLEKVEAELAHPRGARSLSSHLQSRLHLKGVKAGLLRELVSKDDFADMGKLAR 300
           LDLLPDW LEKV AEL+HPRGARSLSSHLQSRLHLKGVKAGLLREL+ KD FADM KL  
Sbjct: 277 LDLLPDWTLEKVSAELSHPRGARSLSSHLQSRLHLKGVKAGLLRELLDKDTFADMDKL-- 334

Query: 301 AXARAIKALPLTVLRTRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPTG 360
             ARAIKALPLTVLR RPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPTG
Sbjct: 335 --ARAIKALPLTVLRPRPIAEAISSAGGVSFEALDDALMLRALPGVFCAGEMLDWEAPTG 392

Query: 361 GYLLTACFATGRAAAAGALHWLISDDRAASLSHSSKEQH 399
           GYLLTACFATG AA  G + WL ++ + A L+ S +E+ 
Sbjct: 393 GYLLTACFATGHAAGHGVVQWLKAEGQQAGLNASQEERQ 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,328,036
Number of extensions: 58407
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)