BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0008.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA poly...   719   0.0  

>gi|300313613|ref|YP_003777705.1| nucleotidyltransferase/DNA
           polymerase involved in DNA repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  719 bits (1856), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/382 (92%), Positives = 369/382 (96%)

Query: 1   MANERRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60
           MAN+RRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG
Sbjct: 1   MANDRRIAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAG 60

Query: 61  RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRSIAPLI 120
           RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVR+IAPLI
Sbjct: 61  RGVVTTSTYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYSRLFKEAVRNIAPLI 120

Query: 121 EDRGIDEIYIDLSAWPDTAHEVARQIKDAVHAATALTCSVGVAPNKMLAKISSELDKPDG 180
           EDRGIDEIYIDLSAW DTA EVARQIKDAVHAAT+LTCS+GVAPNKMLAKISSELDKP+G
Sbjct: 121 EDRGIDEIYIDLSAWSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNG 180

Query: 181 LTILTPEDIERRIWPLPARKINGIGPKAAEKLAALGIETVADLARASPELLRAHFGRSYS 240
           LTILTP DIERRIWPLP RKINGIGPKAAEKL+ALGI+TVADLA A+P+LLRAHFGRSY+
Sbjct: 181 LTILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGAAPDLLRAHFGRSYA 240

Query: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRTQLSEIFTTLCVKLAGDLER 300
           EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADR QLSEIFT LCVKLA DL+R
Sbjct: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300

Query: 301 KGYVGRTIGIKLKYADFQGVTRDVTLPAPTGDAATIRQAAGECLKRVPLEKKLRLLGVRV 360
           KGYVGRTIGIKLKYADF+GVTRDVTLP+PTGDAA IRQAAGECLKRVPL+KKLRLLGVRV
Sbjct: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRVPLDKKLRLLGVRV 360

Query: 361 GALSRKDELALTAQALQAELPF 382
           GALS+KDE A  + A+QAELPF
Sbjct: 361 GALSKKDEQAAASHAVQAELPF 382


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,193,913
Number of extensions: 51121
Number of successful extensions: 180
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)