BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0006.p
         (392 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase [He...   684   0.0  

>gi|300313615|ref|YP_003777707.1| FAD dependent dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 402

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/396 (85%), Positives = 358/396 (90%), Gaps = 10/396 (2%)

Query: 1   LHYAVIGGGINGLAVARQLLLDQPDVRVTVFEKEDAVARHQSSHNSGVT----------L 50
           L YAVIGGGINGLAVARQLLLD PDVRVTVFEKE+AVA+HQSSHNSGV           L
Sbjct: 4   LRYAVIGGGINGLAVARQLLLDDPDVRVTVFEKEEAVAQHQSSHNSGVVHAGLYYEPGGL 63

Query: 51  KARLCRRGVELVRTYCEQNGLPYDECGKVVVALDADELPRLEAIHRKALANGVPDVEMID 110
           KA LCRRGVELV+ YCEQN LPYDECGKVVVAL  +ELPRLEAI+RKALANGVPDVEMID
Sbjct: 64  KATLCRRGVELVKRYCEQNALPYDECGKVVVALGEEELPRLEAIYRKALANGVPDVEMID 123

Query: 111 GARLREIEPHCVGLRALYSPRTAIVSYGQIAQHMAQEIVQRGGVIRLNAAVQRVCEQGQH 170
            ARLREIEP+CVGLRALYSPRTAIVSYGQIAQ MAQEI +RGG IRLNA+V+RV E+G  
Sbjct: 124 AARLREIEPNCVGLRALYSPRTAIVSYGQIAQRMAQEIEERGGTIRLNASVRRVIERGDQ 183

Query: 171 VQIELAGGEVHGDAFDFAIACCGLQSDRLAQQSGDVATPRIVPFFGQYYVIDEAFKSHVR 230
           V IEL  GE+H +AFD AIAC GLQSDRLAQQSGD ATPRIVPFFGQYYVIDEA+KSHV+
Sbjct: 184 VHIELQSGEMHPEAFDSAIACSGLQSDRLAQQSGDAATPRIVPFFGQYYVIDEAYKSHVK 243

Query: 231 GLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENYQGDRFSLRDVADYLGYPGF 290
           GLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENY GDRFSLRD+ADYL YPGF
Sbjct: 244 GLIYPVPDPRFPFLGVHFTKRIDGQMTIGPNAFISLGRENYHGDRFSLRDIADYLSYPGF 303

Query: 291 WKFASRNMAATLRELKTVVSERHFVREAARYVPALSEVSVTPAVRGIRAQAMEPDGRLVD 350
           WKFASRN+ ATLRELKTVVSER FVREAARYVPAL+EV VTPAVRGIRAQAME +GRLVD
Sbjct: 304 WKFASRNVPATLRELKTVVSERIFVREAARYVPALAEVGVTPAVRGIRAQAMESNGRLVD 363

Query: 351 DFVIRQSSRVTHIRNAPSPGATSSLAIGEHIVRNLI 386
           DFVIRQSSRVTHIRNAPSPGATSSLAIGEHIVRNLI
Sbjct: 364 DFVIRQSSRVTHIRNAPSPGATSSLAIGEHIVRNLI 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,279,213
Number of extensions: 54862
Number of successful extensions: 183
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,207,925
Effective search space: 368417125
Effective search space used: 368417125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)