BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0027.0004.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313616|ref|YP_003777708.1| TetR family transcription regul...   305   2e-84
gi|300311331|ref|YP_003775423.1| transcription regulator protein...    79   1e-16

>gi|300313616|ref|YP_003777708.1| TetR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 210

 Score =  305 bits (780), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 144/153 (94%), Positives = 150/153 (98%)

Query: 1   MIKTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFR 60
           MI+TRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADL EAIGVKAPSLY+AFGDKDALFR
Sbjct: 1   MIRTRGRPRSFDRDQALQQAMQVFWSKGYEGTTMADLTEAIGVKAPSLYAAFGDKDALFR 60

Query: 61  EVMEVYSRTISAEPLRLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISA 120
           EV+EVY+RT+SAEPLRLLQAG+GIREDLQAMLRASVRMYSGKSTVPGLP GKGCMVVISA
Sbjct: 61  EVVEVYARTVSAEPLRLLQAGKGIREDLQAMLRASVRMYSGKSTVPGLPAGKGCMVVISA 120

Query: 121 INCAPENSEHSDALSQRRHKRRNEIRARLLQAH 153
           INCAPENSEHSDALSQRRHKRRNEIRARLLQA 
Sbjct: 121 INCAPENSEHSDALSQRRHKRRNEIRARLLQAQ 153


>gi|300311331|ref|YP_003775423.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score = 79.0 bits (193), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 70/117 (59%), Gaps = 8/117 (6%)

Query: 6   GRPRSFDRDQALQQAMQVFWSKGYEGTTMADLCEAIGVKAPSLYSAFGDKDALFREVMEV 65
           GRPR FD DQAL  A++VF  +GY G +++DL EA+ +   SLY AF DK +LF   +E 
Sbjct: 32  GRPREFDADQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALER 91

Query: 66  YSRTISAEPL-RLLQAGQGIREDLQAMLRASVRMYSGKSTVPGLPTGKGCMVVISAI 121
           Y RT  +E L R + AG   RE L+ ML     ++  +S   G    +GC+VV SA+
Sbjct: 92  Y-RTQRSEKLRRAIDAGATGRERLRNML-----LFYAESA-QGAAGRQGCLVVSSAV 141


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 453,468
Number of extensions: 17172
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)