BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0006.p (336 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313310|ref|YP_003777402.1| sugar ABC transporter ATPase [H... 581 e-167 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 180 2e-46 gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [H... 164 9e-42 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 156 2e-39 gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [H... 152 5e-38 >gi|300313310|ref|YP_003777402.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 502 Score = 581 bits (1498), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/334 (85%), Positives = 306/334 (91%), Gaps = 4/334 (1%) Query: 1 VNASHPPSAALCSLSHIRKSFGPVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGV 60 +NASHPPSAALCSLSHIRKSFGPVKALQDVS+DI PG+CWGLVGHNGAGKSTLMNVLAGV Sbjct: 1 MNASHPPSAALCSLSHIRKSFGPVKALQDVSLDILPGQCWGLVGHNGAGKSTLMNVLAGV 60 Query: 61 LPGDDGQIIIDGQARQNYTTQAAYRLGVRCVFQELSLCQNLNVAENLCVFHPQLKGWGWR 120 L DDGQI++DGQA+ YTTQ AYRLGVRCVFQELSLCQNLNVAENLCVFHP LKGWGWR Sbjct: 61 LASDDGQIVLDGQAQPAYTTQTAYRLGVRCVFQELSLCQNLNVAENLCVFHPSLKGWGWR 120 Query: 121 RRARKLVTEKLDDIFPGHGIDPDRIVGELSITQRQMVEIACAFTVVDAPVRLLILDEPTS 180 RRAR+LVTEKLD+IFPGHGIDPDRIVGELSITQRQMVEIACAF VVDAPVRLLILDEPTS Sbjct: 121 RRARRLVTEKLDEIFPGHGIDPDRIVGELSITQRQMVEIACAFVVVDAPVRLLILDEPTS 180 Query: 181 SLDAQTAARLTAYIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRDGQLVLQDHTAHLTR 240 SLDAQTAARLTAYIR RLEDGMSLVFISHMLGEIFDCCN IAVMRDGQLVL D +A+L+R Sbjct: 181 SLDAQTAARLTAYIRHRLEDGMSLVFISHMLGEIFDCCNYIAVMRDGQLVLSDQSANLSR 240 Query: 241 DALVHAMGHADQKQIERQAEQQAQQESDSADVQSQQLLEVKLPAVSPVGALGVRRGQVVG 300 +ALVHAMGHADQKQIERQ EQQ + AD +Q LLE+ LPA S V L VR+GQV+G Sbjct: 241 EALVHAMGHADQKQIERQVEQQVEH----ADSTAQSLLEIALPATSAVSTLAVRQGQVIG 296 Query: 301 LSGLAGQGQTEMLIRLFEQYRGKMRVAFVAGDRA 334 LSGLAGQGQTEMLI+LFE+YRGKMRVAFVAGDRA Sbjct: 297 LSGLAGQGQTEMLIQLFERYRGKMRVAFVAGDRA 330 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 180 bits (456), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 181/319 (56%), Gaps = 26/319 (8%) Query: 9 AALCSLSHIRKSFGPVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGVLPGDDGQI 68 AA+ L+ I+K+FGPV L+ V ++++ GE L+G NGAGKSTLM +L G++ D G+I Sbjct: 3 AAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAGEI 62 Query: 69 IIDGQARQNYTTQAAYRLGVRCVFQELSLCQNLNVAENLCVFHPQLKGWGW------RRR 122 IDGQ + + +AA GV VFQE SL L+ +N+ + WGW RRR Sbjct: 63 RIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLARELRSRWGWLQRAAMRRR 122 Query: 123 ARKLVTEKLDDIFPGHGIDPDRIVGELSITQRQMVEIACAFTVVDAPVRLLILDEPTSSL 182 A++++ + G I D V +LS+ Q+Q VEIA A +DA R+L+LDEPT++L Sbjct: 123 AQEIIGQL------GVAIPLDVPVCKLSVAQQQFVEIAKALA-LDA--RILVLDEPTATL 173 Query: 183 DAQTAARLTAYIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRDGQLVLQDHTAHLTRDA 242 L A +R G++++FISH L EIF+ C+RI V+RDG V TA + + Sbjct: 174 TPAEVEHLFAVMRSLRAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQAR 233 Query: 243 LVHAMGHADQKQIERQAEQ-QAQQESDSADVQSQQLLEV---KLPAVSPVGALGVRRGQV 298 LV M + R+ E + + + + + +LEV +L +PV +RRG++ Sbjct: 234 LVEMM-------VGRRIENCFPPKPAKGGEGEGEVVLEVHALQLRRQAPVSQFQLRRGEI 286 Query: 299 VGLSGLAGQGQTEMLIRLF 317 +G +GL G G+TE ++ + Sbjct: 287 LGFAGLVGSGRTETVLAML 305 >gi|300310367|ref|YP_003774459.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 516 Score = 164 bits (415), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 181/330 (54%), Gaps = 23/330 (6%) Query: 11 LCSLSHIRKSFGPVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGVLPGDDGQIII 70 + LS I K+F VKAL DV + + PGE L+G NGAGKSTL+ VL GV D G+I + Sbjct: 12 MLELSGIHKAFAGVKALTDVGLRLFPGEVHTLMGQNGAGKSTLIKVLTGVHEPDGGKIEL 71 Query: 71 DGQARQNYTTQAAYRLGVRCVFQELSLCQNLNVAENLCV--FHPQLKGWGWRR---RARK 125 DG+A +T A LG+ V+QE++LC NL+VAEN+ V + + W+ ++R+ Sbjct: 72 DGRAIAPASTLEAQALGISTVYQEVNLCPNLSVAENIFVGRYPTRFGRIDWKSVHTQSRQ 131 Query: 126 LVTEKLDDIFPGHGIDPDRIVGELSITQRQMVEIACAFTVVDAPVRLLILDEPTSSLDAQ 185 L+ + D ID + + +QMV I+ A +V ++LILDEPTSSLD Sbjct: 132 LLQQLQID------IDVAAPLSSYPLAIQQMVAISRALSV---SAKVLILDEPTSSLDEA 182 Query: 186 TAARLTAYIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRDGQLVLQDHTAHLTRDALVH 245 +L +RR E GM+++F++H L + ++ +RI V+R+G + + L+R LV+ Sbjct: 183 EVQQLFKVLRRLREQGMAILFVTHFLDQTYEISDRITVLRNGVREGEYLVSELSRLDLVN 242 Query: 246 AM---GHADQKQIERQAEQQAQQESDSADVQSQQLLEVKLPAVSPVGA---LGVRRGQVV 299 M D +++E AE A + S A L+ + V A L +RRG+V Sbjct: 243 KMVGVTAVDHRKVEAGAEALASELSTDAAAAGAVFLQAEGFGRRGVLAPQDLQLRRGEVF 302 Query: 300 GLSGLAGQGQTEMLIRLFEQYR---GKMRV 326 GL GL G G+TEM LF R G++R+ Sbjct: 303 GLCGLLGSGRTEMARLLFGADRADCGQLRI 332 Score = 59.3 bits (142), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 99/214 (46%), Gaps = 10/214 (4%) Query: 19 KSFGPVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGVLPGDDGQIIIDGQARQNY 78 + FG L + ++ GE +GL G G+G++ + +L G D GQ+ I+G+ + Sbjct: 281 EGFGRRGVLAPQDLQLRRGEVFGLCGLLGSGRTEMARLLFGADRADCGQLRIEGKEVRLN 340 Query: 79 TTQAAYRLGVRCVFQELS---LCQNLNVAENLCVFHPQLKGWGWRRRARKLVTEKLDDIF 135 + A G+ ++ L+V EN+ + Q + +R RK + D Sbjct: 341 VPRDAIAAGIGFCSEDRKKEGAILELSVRENI-ILALQARQGLFRVLPRKRQNQIAADYV 399 Query: 136 PGHGI---DPDRIVGELSITQRQMVEIACAFTVVDAPVRLLILDEPTSSLDAQTAARLTA 192 GI D + +G LS +Q +A + D +LILDEPT +D + + Sbjct: 400 KWLGIKTADLETPIGLLSGGNQQKALLA-RWLATDPG--MLILDEPTRGIDVRAKQEIMD 456 Query: 193 YIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRD 226 ++ GMS++FIS + E+ C +R+ V+RD Sbjct: 457 FVIAMCRKGMSILFISSEIPEVLRCSDRMLVLRD 490 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 171/329 (51%), Gaps = 26/329 (7%) Query: 8 SAALCSLSHIRKSFGPVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGVLPGD--D 65 S L + I KSFG V+AL + + I+PGEC GL G NGAGKSTLM +L+GV P + Sbjct: 2 SEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTWE 61 Query: 66 GQIIIDGQARQNYTTQAAYRLGVRCVFQELSLCQNLNVAENLCVFHP------QLKGWGW 119 G+I+ DG+ Q ++ + G+ + QEL L L+VAEN+ + H ++ Sbjct: 62 GEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPAM 121 Query: 120 RRRARKLVTE-KLDDI---FPGHGIDPDRIVGELSITQRQMVEIACAFTVVDAPVRLLIL 175 RRA +L+ E + DI P V + +Q+VEIA A + RLLIL Sbjct: 122 YRRAEELMRELNMPDINVALP---------VSQYGGGHQQLVEIAKAL---NKDARLLIL 169 Query: 176 DEPTSSLDAQTAARLTAYIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRDGQLVLQDHT 235 DEP+SSL A L I+ G++ V+ISH L E+ + C+ I+V+RDG+ + Sbjct: 170 DEPSSSLTASEIGVLLKIIKDLKARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPM 229 Query: 236 AHLTRDALVHAM-GHADQKQIERQAEQQAQQESDSADVQSQQLLEVKLPAVSPVGALGVR 294 + D ++ M G + + ++ ++ + + V V + VR Sbjct: 230 QEMDVDKIITQMVGREITAMYPERNHAIGEVVLEARNITCYDIDNPRRKRVDDV-SFSVR 288 Query: 295 RGQVVGLSGLAGQGQTEMLIRLFEQYRGK 323 RG+++G++GL G G+TE++ +F YRG+ Sbjct: 289 RGEILGIAGLVGAGRTELVSAIFGAYRGR 317 >gi|300311609|ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 152 bits (383), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 175/336 (52%), Gaps = 15/336 (4%) Query: 2 NASHPPSAALCSLSHIRKSFG-PVKALQDVSVDIQPGECWGLVGHNGAGKSTLMNVLAGV 60 N S + L +LS I K + PV L + +D++PG+ L G NGAGKSTL ++ G+ Sbjct: 4 NDSLSQGSPLLTLSGIGKRYAAPV--LDGIDLDLRPGQVLALTGENGAGKSTLSKIICGL 61 Query: 61 LPGDDGQIIIDGQARQNYTTQAAYRLGVRCVFQELSLCQNLNVAENLCVFH-PQLKGWGW 119 + G +++DGQ + A LG+R V QEL+L L++AENL + P+ GW Sbjct: 62 VDASAGGMMLDGQPYAPASRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWID 121 Query: 120 RRRARKLVTEKLDDIFPGHGIDPDRIVGELSITQRQMVEIACAFTVVDAPVRLLILDEPT 179 R++ + +++ + G +DP VG+L + +QMVEIA R LILDEPT Sbjct: 122 RKKLAEAARAQMEVVGLGE-LDPWTPVGDLGLGHQQMVEIARNLI---GSCRCLILDEPT 177 Query: 180 SSLDAQTAARLTAYIRRRLEDGMSLVFISHMLGEIFDCCNRIAVMRDGQLVLQDHTAHLT 239 + L + L + I R +G+++++ISH L E+ +RI V+RDG+LV D + Sbjct: 178 AMLTNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYS 237 Query: 240 RDALVHAMGHADQKQIERQAEQQAQQESDSADVQSQQLLEVKLPAVSPVGALGVRRGQVV 299 + LV M K + A+ A V + L + P V P +L + G+V+ Sbjct: 238 TEQLVQLMAGELTK-----VDLDAEHRRIGAPVLRIRGLG-RAPVVHPA-SLALHAGEVL 290 Query: 300 GLSGLAGQGQTEMLIRLFEQYRGKMRVAFVAGDRAP 335 G++GL G G+TE+L +F R + F+ + P Sbjct: 291 GIAGLIGSGRTELLRLIFGADRAEQGEIFIGDSQEP 326 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,012,961 Number of extensions: 40325 Number of successful extensions: 550 Number of sequences better than 1.0e-08: 117 Number of HSP's gapped: 397 Number of HSP's successfully gapped: 124 Length of query: 336 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 250 Effective length of database: 1,212,660 Effective search space: 303165000 Effective search space used: 303165000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)