BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0002.p
         (295 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DM...   385   e-108

>gi|300311010|ref|YP_003775102.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  385 bits (988), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/291 (72%), Positives = 245/291 (84%)

Query: 2   PPPLLSGILVALIWGVQPVISRYGLQQGLTPLDATLMRFLTSGLLILPFAWRRGLWQACG 61
           PPPLL+GILVALIWG+QPVISRYG Q GLTP DATL+R+LTSGLL+LP+ WRRGL +ACG
Sbjct: 48  PPPLLAGILVALIWGIQPVISRYGFQHGLTPQDATLVRYLTSGLLMLPYVWRRGLAKACG 107

Query: 62  VGWGRGLVLFLLSGPLFSLVLVAGVNYAPASHGALIHPALTPLFGMAISRFALGQRERIS 121
           + W R LVLFLLSGPLFSLVLV GVNYAPASHGALIHPALTPLFGMAISRF   + ER S
Sbjct: 108 LRWPRALVLFLLSGPLFSLVLVGGVNYAPASHGALIHPALTPLFGMAISRFVFRRDERFS 167

Query: 122 LWGVLLLLAGLVLVALNGILASGGLAPDGAWRGDLLFVLSALMWSSYLMLNRAWKIAPLD 181
           LWG +LL+ GL++V L+G++A G LAP+GAWRGDLLFVLSA MW+ YL+LN+ W + PLD
Sbjct: 168 LWGTVLLVGGLLVVGLHGVMAGGSLAPEGAWRGDLLFVLSAFMWAWYLVLNKTWGLPPLD 227

Query: 182 AVALTQVLSLACMLLALPWLGTQTFSKPASALLLQSAYQGVLVSIVSVALFNWVVARLGV 241
           AVA+TQVLSL  +L  LPW G +TF+KP +AL LQS Y GVLVSIVSVALFNWVVARLGV
Sbjct: 228 AVAMTQVLSLGWVLAVLPWQGPETFAKPWAALALQSLYHGVLVSIVSVALFNWVVARLGV 287

Query: 242 KALMLNALSPLFGVLASAWILGETLSVSMMTGAVAIVAGLGVTMKKKRPVP 292
           KA+MLNALSPLFGVLASAW L E L  SM+ GA AI+AGL +++++    P
Sbjct: 288 KAMMLNALSPLFGVLASAWALREPLPPSMLAGAAAIMAGLALSLRRPSGSP 338


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 957,693
Number of extensions: 38243
Number of successful extensions: 230
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 4
Length of query: 295
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,217,395
Effective search space: 255652950
Effective search space used: 255652950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)