BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0001.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311011|ref|YP_003775103.1| AraC family transcription regul... 382 e-107 gi|300313525|ref|YP_003777617.1| AraC family transcription regul... 153 2e-38 gi|300310311|ref|YP_003774403.1| AraC family transcription regul... 138 6e-34 gi|300310273|ref|YP_003774365.1| AraC family transcription regul... 128 6e-31 >gi|300311011|ref|YP_003775103.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 273 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 184/245 (75%), Positives = 209/245 (85%) Query: 32 LPIDRVDRIARPVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHA 91 LPID+VD IARPVVAAGA Y ++Q WHSHRRAQLL+GL GLMQV+T DGAWVVPPQHA Sbjct: 14 LPIDQVDGIARPVVAAGAQYRHGAVQPWHSHRRAQLLYGLSGLMQVITADGAWVVPPQHA 73 Query: 92 VWIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYA 151 VWIPSGREHQSRML VTTCSAF+EPEHAPR A +CQVL V PLLRELLIEATR+DPHY Sbjct: 74 VWIPSGREHQSRMLQAVTTCSAFIEPEHAPRVASSCQVLAVRPLLRELLIEATRMDPHYV 133 Query: 152 PDSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHM 211 SREE L+ LLL EI RA EIP +VPLP E +LG LC F+ +PSIR+ PA+WA QLH+ Sbjct: 134 LHSREENLIRLLLDEIGRAEEIPAHVPLPPEPRLGELCHRFLAAPSIRSGPAQWALQLHI 193 Query: 212 SERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKR 271 SER+F+RRFLAQTGMGFQQWRLRAC++ AISRLALG VT IAYDLGYE+PA FSTMF++ Sbjct: 194 SERTFSRRFLAQTGMGFQQWRLRACVMYAISRLALGQPVTTIAYDLGYERPAAFSTMFRK 253 Query: 272 MTGYV 276 MTG++ Sbjct: 254 MTGHM 258 >gi|300313525|ref|YP_003777617.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 298 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/250 (35%), Positives = 136/250 (54%), Gaps = 4/250 (1%) Query: 38 DRIARPVVAAGADYARDSLQA-WHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPS 96 DR+ V A ++D + HSHR+ QL+ L G + T G W+VPPQ AVWIP Sbjct: 14 DRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWIPP 73 Query: 97 GREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPDSRE 156 G H +R+ L C F+ P+ A + C L + PLL +++ YAP R Sbjct: 74 GVPHSNRVTLDGQLCFLFIAPQAASMPEQCC-TLALSPLLVQMICHLAEQRQDYAPHERT 132 Query: 157 EALMHLLLKEIARARE--IPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMSER 214 L +L++E+ ++ +P+++P PQ +L A+ R P+ R A+W ++ MSER Sbjct: 133 ARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRRTVAQWGQRHAMSER 192 Query: 215 SFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMTG 274 SF R A+TGM F +WR + ++ A+ RLA G SV ++ DLGY+ + F TMF++ G Sbjct: 193 SFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKTLG 252 Query: 275 YVPSSHPAVR 284 P+ + A R Sbjct: 253 KPPARYMAQR 262 >gi|300310311|ref|YP_003774403.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 274 Score = 138 bits (347), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 131/248 (52%), Gaps = 2/248 (0%) Query: 34 IDRVDRIARPVVAAGADY-ARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAV 92 +D + VVA + ARD L A HSHRR QLL+ + G+MQV T G W+VPP A+ Sbjct: 14 VDTFQHLPSSVVAFARELSARDLLTA-HSHRRGQLLYAVEGVMQVRTPQGVWLVPPHRAL 72 Query: 93 WIPSGREHQSRMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAP 152 W+P EH+ ML V+ + ++ C++LEV LLREL++ YAP Sbjct: 73 WVPPQVEHEILMLSKVSMRTLYINQAQGRELGEQCRLLEVSVLLRELILALLAEPRDYAP 132 Query: 153 DSREEALMHLLLKEIARAREIPMYVPLPQEEKLGALCRDFMRSPSIRARPAEWAEQLHMS 212 SR + L+L E+ARA IP+ +P P + +L A+C + P + A+WA S Sbjct: 133 QSRAGHVAELILSELARAPAIPVAIPWPGDRRLQAICEAILADPGRQFSLADWAGMGGAS 192 Query: 213 ERSFTRRFLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRM 272 R+ R F +TG+ F+ W + + A+ RL+ G V +A LGY + FS MF++ Sbjct: 193 VRTVIRLFPKETGLQFRHWVQQVHLSEALVRLSRGDPVGVVAQALGYRSQSAFSNMFRKA 252 Query: 273 TGYVPSSH 280 P+ + Sbjct: 253 LRTTPNHY 260 >gi|300310273|ref|YP_003774365.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 128 bits (321), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 119/240 (49%), Gaps = 3/240 (1%) Query: 43 PVVAAGADYARDSLQAWHSHRRAQLLFGLGGLMQVVTQDGAWVVPPQHAVWIPSGREHQS 102 PV Y S+ H H + L++ GL++V + G W+VPP AVW+ SG H Sbjct: 24 PVFGVSGRYPAGSVVPMHQHPQGHLIYADSGLLRVQAESGQWLVPPTAAVWLRSGVAHSL 83 Query: 103 RMLLPVTTCSAFVEPEHAPRAARTCQVLEVHPLLRELLIEATRIDPHYAPDSREEALMHL 162 M + + FV + R V+ V PLLREL+I + R L L Sbjct: 84 AMPVTLQAYGLFVRQDVCARLPAFDCVVHVSPLLRELIITLAQAREENMSAKRMRLLGAL 143 Query: 163 LLKEIARAREIPMYVPLPQEEKLGA---LCRDFMRSPSIRARPAEWAEQLHMSERSFTRR 219 +++E+ +P ++P P E G LC+ + P A AEWA++L M +++F RR Sbjct: 144 VMEEVLTQPTLPFHLPWPMSETDGPMARLCQALLDDPGDMATAAEWADRLAMGQKTFHRR 203 Query: 220 FLAQTGMGFQQWRLRACIVNAISRLALGHSVTAIAYDLGYEQPATFSTMFKRMTGYVPSS 279 FL TGM F +WR + +++++ L G +T +A GY+ + ++T F + G PS+ Sbjct: 204 FLQSTGMTFGKWRQQLRLMSSLPLLMQGMPITQVALASGYDSHSAYTTAFGKQFGKPPSA 263 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.134 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 956,469 Number of extensions: 40631 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 4 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)