BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0206.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909...   520   e-149

>gi|300313198|ref|YP_003777290.1| hypothetical protein Hsero_3909
           [Herbaspirillum seropedicae SmR1]
          Length = 291

 Score =  520 bits (1340), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/291 (90%), Positives = 270/291 (92%), Gaps = 6/291 (2%)

Query: 1   MDHTNPPASTVGHSPESSPLGKSSEYPTHYDPSLLFPIPRAPKRAELQISGTLPFFGVDL 60
           MDHTNP AS   HSPESSPLGKSS+YPTHYDPSLLFPIPRAPKRAELQISGTLPFFGVDL
Sbjct: 1   MDHTNPSASPASHSPESSPLGKSSQYPTHYDPSLLFPIPRAPKRAELQISGTLPFFGVDL 60

Query: 61  WTAYEISWLNLRGKPQIAIATFMVPADSPDIIESKSFKLYLNSFNQERLESADQLIDKMR 120
           WTAYEISWLNLRGKPQIAIATFMVPADSP+IIESKSFKLYLNSFNQERLESADQLIDKMR
Sbjct: 61  WTAYEISWLNLRGKPQIAIATFMVPADSPNIIESKSFKLYLNSFNQERLESADQLIDKMR 120

Query: 121 TDLSAAAGASVQVTLTESSQFGQMQFGELSGLLLDRLDVEIEPATGAAHPDGSLLRANTD 180
           TDLSAAAGA VQV LTE +QFGQ+QFGELSGLLLDRLDVEIE A   AHPDGS LRANT+
Sbjct: 121 TDLSAAAGAQVQVALTEPAQFGQLQFGELSGLLLDRLDVEIEAAASGAHPDGSQLRANTE 180

Query: 181 EATVEETLVSHLLKSNCPVTSQP------APDLGAPIDQERLLKYIIGFREHNEFHEQCV 234
           EATVEETLVSHLLKSNCPVTSQP         +GAPIDQERLLKYIIGFREHNEFHEQCV
Sbjct: 181 EATVEETLVSHLLKSNCPVTSQPDWGSVQIQYVGAPIDQERLLKYIIGFREHNEFHEQCV 240

Query: 235 ERIFTDILRHCKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ 285
           ERIFTDILR+CKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ
Sbjct: 241 ERIFTDILRYCKPQKLAVYARYTRRGGLDINPWRSNFSSAKPPSQLRNARQ 291


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 917,803
Number of extensions: 38055
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)