BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0205.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313199|ref|YP_003777291.1| lipoprotein [Herbaspirillum ser...   348   3e-97

>gi|300313199|ref|YP_003777291.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 205

 Score =  348 bits (892), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 158/184 (85%), Positives = 174/184 (94%)

Query: 21  RKAALVSAATLALAPAAHAEDNQYSLWQQTKDHASRIWNQGDDAIYLSGVAHHGRSTYSR 80
           R+ A+V+ A +ALAP AHAEDNQYSLWQQTKDHA+ IWNQG+  +YLSGVAHHGR TY++
Sbjct: 22  RRLAMVATAAIALAPVAHAEDNQYSLWQQTKDHAANIWNQGESELYLSGVAHHGRGTYTK 81

Query: 81  DKLNELNEHAWGAGYGKTLRNEQGNDESLYGFVIKDSHRHPQYMAGYAYEWVFPIAKTGL 140
           +KLNELNEHAWG GYGKTLRNE+G+DESLYGFV+KDSHRHPQYMAGYAYEWVFPIAKTGL
Sbjct: 82  EKLNELNEHAWGLGYGKTLRNEKGDDESLYGFVLKDSHRHPQYMAGYAYEWVFPIAKTGL 141

Query: 141 ELGLGGTAMLMSRQDYFHSIPFPVPLPLASIGTQKAKIMFAYVPRLSANKNNGDVLLIFG 200
           E+GLGGTAMLMSRQDYFHS+PFPVPLPLASIGT+K KIMFAYVPRLSANKNNGDVLLIFG
Sbjct: 142 EVGLGGTAMLMSRQDYFHSVPFPVPLPLASIGTKKGKIMFAYVPRLSANKNNGDVLLIFG 201

Query: 201 RIEM 204
           RIEM
Sbjct: 202 RIEM 205


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 619,844
Number of extensions: 24953
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)