BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0201.p
         (380 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...   701   0.0  
gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...    59   7e-10

>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/379 (89%), Positives = 357/379 (94%), Gaps = 2/379 (0%)

Query: 1   MKGLVESRRKKASTAENAGAQYEDPSFSAEVIAWQKQHGRHKLPWQNTRDAYRVWLSEIM 60
           MKG+VESRRK  ++AE    QYEDPSFSA VIAWQKQHGRHKLPWQNTRDAYRVWLSEIM
Sbjct: 1   MKGVVESRRKAPASAE--AGQYEDPSFSAAVIAWQKQHGRHKLPWQNTRDAYRVWLSEIM 58

Query: 61  LQQTQVAAVIPYYQRFLDRCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVAE 120
           LQQTQVAAVIPYYQRFL+RCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVV +
Sbjct: 59  LQQTQVAAVIPYYQRFLERCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVEQ 118

Query: 121 YGGRFPDDPELLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGVDGYPGAKP 180
           YGGRFPDDP+LLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFG+DGYPGAKP
Sbjct: 119 YGGRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKP 178

Query: 181 VEDQLWLRAVALLPEEDIESYTQGLMDLGATLCVRGKPACTRCPLAGRCVALAEDRVAEL 240
           +ED+LWLRAVALLP++DIESYTQGLMDLGATLCVRGKPAC RCPLAGRCVALA+DRVAEL
Sbjct: 179 IEDKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACERCPLAGRCVALAQDRVAEL 238

Query: 241 PVSKPKKAVPEKETVMLVITQGEDVLLEQRPDSGIWGGLLSLPEIGVGNAEHFDTAVRTL 300
           PVSKPKKAVPE+ETVMLVIT GEDVLLEQRPDSGIWGGLLSLPEI VG A  FDTAVRTL
Sbjct: 239 PVSKPKKAVPERETVMLVITHGEDVLLEQRPDSGIWGGLLSLPEIAVGGAAQFDTAVRTL 298

Query: 301 VASYGELDGCRKLQPFSHVFTHFKLHVAPFQVALKSRSHRIAEGGLVWYPARKLADAPLP 360
           VA YGEL GCRKLQPFSHVFTHFKLHVAPFQVA++SRS RIAEG LVWYP  +L +APLP
Sbjct: 299 VAPYGELQGCRKLQPFSHVFTHFKLHVAPFQVAMQSRSQRIAEGALVWYPVARLGEAPLP 358

Query: 361 APVKKLLLGVLRADDLLAT 379
           APVKKLLLG LR+DDLLAT
Sbjct: 359 APVKKLLLGALRSDDLLAT 377


>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 92  EDVMALWSGLGYY-TRARNLHKCAQRVVAEYGGRFPDDPELLADLPGIGRSTAAAIAAFS 150
           + +M     +G Y T+A+N+ +  + ++ E+GG+ P+  E L  LPG+GR TA  +   +
Sbjct: 70  DQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRKTANVVLNTA 129

Query: 151 YGRRAAILDGNVKRVFARVFGVDGYPGAKPVEDQLWLRAVALLPEEDIESYTQGLMDLGA 210
           +G     +D ++ RV  R     G    K V D++  + +  +  E  +     L+  G 
Sbjct: 130 FGHPTIAVDTHIFRVSNRT----GLAPGKDV-DEVERKLIKFVAPEFRQDAHHWLILHGR 184

Query: 211 TLCVRGKPACTRCPLAGRC 229
             C+  KP C  C +A  C
Sbjct: 185 YTCIARKPQCWNCIIADLC 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,208,244
Number of extensions: 52814
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 2
Length of query: 380
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 293
Effective length of database: 1,207,925
Effective search space: 353922025
Effective search space used: 353922025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)