BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0198.p
         (476 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [...   853   0.0  

>gi|300313205|ref|YP_003777297.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score =  853 bits (2204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/475 (88%), Positives = 451/475 (94%)

Query: 1   VRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQRLLAR 60
           VRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQRLL R
Sbjct: 125 VRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQRLLVR 184

Query: 61  AKDKQASYTILQNISKPYGDLMETHLALAQGAFGMGDGTTAQREAAAAMKIKPDSELAVL 120
           AKDKQAS+ ILQ IS+PYGDLMETHLALAQGAF +GD T AQREA AAMKIKPDSELAVL
Sbjct: 185 AKDKQASFAILQKISQPYGDLMETHLALAQGAFSVGDTTYAQREARAAMKIKPDSELAVL 244

Query: 121 TAAQVASNNKDATKLVTDFLRKYPDAREVRVAYARSLVEQKDFKLARTQFETLLKEDGED 180
           TAAQVA +NK+ATKLVT+FLRKYPDAREVRVAYAR+LVEQKD+K ARTQFE LLKEDGED
Sbjct: 245 TAAQVAPDNKEATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKEDGED 304

Query: 181 ATTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAQPEEDRDPSQALLLLSRIAEERRDLDS 240
            TTLFALGVLSAQTDQLKDAEYYLQRYLQVLSA PEEDRDPSQA+LLLSRIAEERRD+D 
Sbjct: 305 PTTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERRDIDG 364

Query: 241 ALRYLDQAEPGTEGYLNIQVRRAQLLARKNDIEGARKALEDAQAESTNDGEQLQLLLAES 300
           ALRYLD+ EPGTEGY+NIQVRRAQLLARK+DIEGARKALE AQ+ESTNDGEQLQLL AES
Sbjct: 365 ALRYLDRGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLLQAES 424

Query: 301 SLLRDANRNQEAADVLKGGLQRFPNNTDLLYDYSMVLEKLGKFDEMEKSLRRVMQLAPGN 360
           +LLRDANRNQEAADV+K GL+RFPNNTDLLYDY+MVL+KLGK+DEME SLRRV++LAPGN
Sbjct: 425 ALLRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKLAPGN 484

Query: 361 QHAYNALGYSLADRNIRLPEALELIQKAADLAPEDPFIADSLGWVLFRMGRAEQAETQMR 420
           QHAYNALGYSLADRN+RLPEALELI+KAA++APED FIADSLGWVLFRMGR ++AETQMR
Sbjct: 485 QHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEAETQMR 544

Query: 421 RAYGLRPDVEIGVHLGEVLWTNGKQDEARKVWREVSLKEPNNEVLKSTLSRLNVK 475
           RAYGLRPD EIGVHLGEVLWT GKQDEARK+WR+V+ K+P NEVLKSTL+RLNVK
Sbjct: 545 RAYGLRPDAEIGVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVK 599


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,362,140
Number of extensions: 53702
Number of successful extensions: 253
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 2
Length of query: 476
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 387
Effective length of database: 1,198,455
Effective search space: 463802085
Effective search space used: 463802085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)