BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0196.p
         (293 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313207|ref|YP_003777299.1| 4-diphosphocytidyl-2C-methyl-D-...   530   e-152

>gi|300313207|ref|YP_003777299.1|
           4-diphosphocytidyl-2C-methyl-D-erythritol kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 289

 Score =  530 bits (1366), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/293 (91%), Positives = 277/293 (94%), Gaps = 4/293 (1%)

Query: 1   MTTTLTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDFSLREDGQIRRTNEV 60
           MTT LTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDF++R+DG+I RTNEV
Sbjct: 1   MTTILTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDFAVRDDGRIIRTNEV 60

Query: 61  PGVPEASDLVIRAAHLLREALVLXPPRPQPGADITVHKVLPMGGGVGGGSSDAATTLLVL 120
            GVP  SDLVIRAAHLLR+A      RP+ GADITVHKVLPMGGGVGGGSSDAATTLLVL
Sbjct: 61  LGVPAESDLVIRAAHLLRDA----AGRPELGADITVHKVLPMGGGVGGGSSDAATTLLVL 116

Query: 121 NHLWKCGYNRASLMEMGLKLGADVPFFLFGRNAFAEGVGEELSPLRTADCWYVVIEPGVS 180
           NHLWKCGYNRASLMEMGLKLGADVPFFLFGRNAFAEGVGEELS LRTADCWYVVIEPGVS
Sbjct: 117 NHLWKCGYNRASLMEMGLKLGADVPFFLFGRNAFAEGVGEELSVLRTADCWYVVIEPGVS 176

Query: 181 VPTSIIFSSKLLTRDTKPIRITDFPDATKQVASSFGKNDLEMVATAHFPEVAAAVEWLGK 240
           VPTSIIFSSKLLTRDT+P+RITDFPDATKQVASSFGKNDLEMVATAHFPEVAAAVEWLGK
Sbjct: 177 VPTSIIFSSKLLTRDTQPVRITDFPDATKQVASSFGKNDLEMVATAHFPEVAAAVEWLGK 236

Query: 241 FGSARMTGSGACVFSAFEHEQQADEVLKQLPSRWIGWKAKAMQEHPLAHLVQS 293
           FG+ARMTGSGACVF AFEHE QADEVLK LPSRWIGWKAKAMQEHPLAHLVQS
Sbjct: 237 FGNARMTGSGACVFCAFEHEHQADEVLKTLPSRWIGWKAKAMQEHPLAHLVQS 289


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 916,644
Number of extensions: 36535
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 209
Effective length of database: 1,222,130
Effective search space: 255425170
Effective search space used: 255425170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)